View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13940_high_36 (Length: 366)
Name: NF13940_high_36
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 26050962 - 26051312
Alignment:
| Q |
1 |
agatatcggaaagtgaatggccagcctcctaagccaaaagcaaatttgactcaaggagatgataggaaatatgacgattatgatgttattgttgccgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||| |
|
|
| T |
26050962 |
agatatcggaaagtgaatggccagcctcctaagccaaaagcaaatttgactcaaggagatgataagaaatatgacgatgatgatgttatggttgccgtca |
26051061 |
T |
|
| Q |
101 |
tatctgaagtacatcttgccagcgatgtccaaaaatgggtggtagactcgggggctacgagacacatctgtgcaaagagagaggcctttacctcctagat |
200 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26051062 |
tatctgaagtacatcttgtcagtgatgtccaaaaatgggtggtagactcgggggctacgagacacatctgtgcaaagagagaggcctttacctcctacat |
26051161 |
T |
|
| Q |
201 |
ttctgtgggggatgatgaagatcaagtctatcttggtgattcaagaaccgctgcgttgaatggcaaaggcaaagtaattctgaagctcacttccggcaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26051162 |
ttctgtgggggatgatgaagatcaagtctatcttggtgattcaagaaccgctgcggtgaatggcaaaggcaaagtaattctgaagctcacttccggcaaa |
26051261 |
T |
|
| Q |
301 |
accttggctttgagtgatgtgctacatgtgcctaccattaggaccaatttg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26051262 |
accttggctttgagtgatgtgctacatgtgcctaccattaggaccaatttg |
26051312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 27075980 - 27076330
Alignment:
| Q |
1 |
agatatcggaaagtgaatggccagcctcctaagccaaaagcaaatttgactcaaggagatgataggaaatatgacgattatgatgttattgttgccgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||| |
|
|
| T |
27075980 |
agatatcggaaagtgaatggccagcctcctaagccaaaagcaaatttgactcaaggagatgataagaaatatgacgatgatgatgttattgctgccgtca |
27076079 |
T |
|
| Q |
101 |
tatctgaagtacatcttgccagcgatgtccaaaaatgggtggtagactcgggggctacgagacacatctgtgcaaagagagaggcctttacctcctagat |
200 |
Q |
| |
|
||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27076080 |
tatctaaagtacatcttgtcaatgatgtccaaaaatgggtggtagactcgggggctacgagacacatctgtgcaaagagagaggcctttacctcctacat |
27076179 |
T |
|
| Q |
201 |
ttctgtgggggatgatgaagatcaagtctatcttggtgattcaagaaccgctgcgttgaatggcaaaggcaaagtaattctgaagctcacttccggcaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27076180 |
ttctgtgggggatgatgaagatcaagtctatcttggtgattcaagaaccactgcggtgaatggcaaaggcaaagtaattctgaagctcacttccggaaaa |
27076279 |
T |
|
| Q |
301 |
accttggctttgagtgatgtgctacatgtgcctaccattaggaccaatttg |
351 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27076280 |
accttggctttgagtgatgtgctaaatgtgcctaccattaggaccaatttg |
27076330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 14635549 - 14635318
Alignment:
| Q |
9 |
gaaagtgaatggccagcctcctaagccaaaagcaaatttgactcaaggag-atgataggaaatatgacgattatgatgttattgttgccgtcatatctga |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||| || | |||||| |||| |||| ||| ||||||||||||||| |||||||||| |
|
|
| T |
14635549 |
gaaagtgaatgatcagcctcctaagccaaaagcaaatttgattcaggggggatgataagaaagatgatgat---gatgttattgttgccatcatatctga |
14635453 |
T |
|
| Q |
108 |
agtacatcttgccagcgatgtccaaaaatgggtggtagactcgggggctacgagacacatctgtgcaaagagagaggcctttacctcctagatttctgtg |
207 |
Q |
| |
|
||| ||||||| ||| ||||| |||||||| ||||| ||| ||||||| || ||||| |||||| |||||| | |||||||| || | || |||| |
|
|
| T |
14635452 |
agtgcatcttgtcagtgatgtgaaaaaatggacggtaggctcatgggctactaggcacatatgtgcattgagagatgtctttaccttatacacttttgtg |
14635353 |
T |
|
| Q |
208 |
ggggatgatgaagatcaagtctatcttggtgattc |
242 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
14635352 |
ggggatgatgaagaccaagtctatcttggtgattc |
14635318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 347
Target Start/End: Complemental strand, 14633626 - 14633530
Alignment:
| Q |
251 |
ctgcgttgaatggcaaaggcaaagtaattctgaagctcacttccggcaaaaccttggctttgagtgatgtgctacatgtgcctaccattaggaccaa |
347 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||||||| | ||| ||||| || |||| |||||| |||||| ||||||| ||||| ||||||||||| |
|
|
| T |
14633626 |
ctgcgtttaatgacaaaggcaaagtacttctgaagcttatttcaggcaagactttggatttgagcgatgtgatacatgtccctactattaggaccaa |
14633530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36611071 - 36611023
Alignment:
| Q |
1 |
agatatcggaaagtgaatggccagcctcctaagccaaaagcaaatttga |
49 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
36611071 |
agatatcgaaaagtgtatggccaacctcctaagccaaaagcaaatttga |
36611023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University