View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13940_high_39 (Length: 354)
Name: NF13940_high_39
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_39 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 27 - 339
Target Start/End: Original strand, 32969267 - 32969582
Alignment:
| Q |
27 |
catacacttgtgacagagtgctaataaatcattaccacaagaaaacatcacaagttaaatagaagcagcatcaaactagaatagaatagagattgtatat |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32969267 |
catacacttgtgacagagtgctaataaatcattaccacaagaaaacatcacaagttaaatagaagcagcatcaaactagaatagaatagagattgtatat |
32969366 |
T |
|
| Q |
127 |
aaagtaatcattgtatatattccgat-agcactatgcatctcttgtagacttgaaatgtatatgcttttgagcacatttggctcagcaaaactgcttgtg |
225 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32969367 |
aaagttatcattgtatatattccgattagcactaggcatctcttgtagacttgaaatgtatatgcttttgagcacatttggctcagcaaaactgcttgtg |
32969466 |
T |
|
| Q |
226 |
aatatctgaagtttatgcatagagggaatttattttttcttcaaattttggcaagtcataagtaattt--aacaatgataccattgaactatggagcatc |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32969467 |
aatatctgaagtttatgcatagagggaatttattttttcttcaaattttggcaagtcataagtaatttaaaacaatgataccattgaactatggagcatc |
32969566 |
T |
|
| Q |
324 |
acatcctatgtccttt |
339 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32969567 |
acatcctatgtccttt |
32969582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University