View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13940_high_46 (Length: 325)

Name: NF13940_high_46
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13940_high_46
NF13940_high_46
[»] chr8 (10 HSPs)
chr8 (1-286)||(2021884-2022169)
chr8 (191-238)||(2053868-2053915)
chr8 (192-238)||(2028085-2028131)
chr8 (192-238)||(10767260-10767306)
chr8 (192-237)||(1950865-1950910)
chr8 (191-238)||(2032621-2032668)
chr8 (191-246)||(2049854-2049909)
chr8 (192-238)||(2036676-2036722)
chr8 (192-238)||(2046053-2046099)
chr8 (190-230)||(15684372-15684412)
[»] chr2 (3 HSPs)
chr2 (193-243)||(28713715-28713765)
chr2 (193-243)||(28743615-28743665)
chr2 (193-240)||(28736989-28737036)
[»] chr4 (1 HSPs)
chr4 (192-238)||(48909126-48909172)
[»] chr1 (3 HSPs)
chr1 (191-237)||(16419770-16419816)
chr1 (191-240)||(16499343-16499392)
chr1 (191-231)||(16443104-16443144)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 2022169 - 2021884
Alignment:
Q  1 aatttgaaagaaaccccatgtctcagatacttctctaattttctcaacaactattttccttcttgttggatcttgatgaatatcaacaagatcaatagaa 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2022169 aatttgaaagaaaccccatgtctcagatgcttctctaattttctcaacaactattttccttcttgttggatcttgatgaatatcaacaagatcaatagaa 2022070  T
Q  101 ggaataacaagtttgtggctgttgcttgaacttgaagttgagtccttgtcgaattcgtgatggaacatgcgagggatgcttgtgacagaagcatcaacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2022069 ggaataacaagtttgtggctgttgcttgaacttgaagttgagtccttgtcgaattcgtgatggaacatgcgagggatgcttgtgacagaagcatcaacaa 2021970  T
Q  201 gtcctttgacaccatcttttgtttcatcaaatgctttgagctcacttgctctatcatagtcatgttttgttgtcattgaaatttca 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2021969 gtcctttgacaccatcttttgtttcatcaaatgctttgagctcacttgctctatcatagtcatgttttgttgtcattgaaatttca 2021884  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 2053915 - 2053868
Alignment:
Q  191 gcatcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 238  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||    
T  2053915 gcatcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 2053868  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 2028131 - 2028085
Alignment:
Q  192 catcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 238  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||    
T  2028131 catcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 2028085  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 10767306 - 10767260
Alignment:
Q  192 catcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 238  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||    
T  10767306 catcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 10767260  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 1950865 - 1950910
Alignment:
Q  192 catcaacaagtcctttgacaccatcttttgtttcatcaaatgcttt 237  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||    
T  1950865 catcaacaagtccttttacaccagcttttgtttcatcaaatgcttt 1950910  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 2032668 - 2032621
Alignment:
Q  191 gcatcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 238  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  2032668 gcatcaacaagtccttttacaccagcttttgtttcatcaaattctttg 2032621  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 2049909 - 2049854
Alignment:
Q  191 gcatcaacaagtcctttgacaccatcttttgtttcatcaaatgctttgagctcact 246  Q
    ||||||||||||||||| |||||  |||||||||||||||||||| || |||||||    
T  2049909 gcatcaacaagtccttttacacctgcttttgtttcatcaaatgctatgcgctcact 2049854  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 2036722 - 2036676
Alignment:
Q  192 catcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 238  Q
    |||||||||||||||| ||||||  ||||||||||||||||||||||    
T  2036722 catcaacaagtcctttcacaccagattttgtttcatcaaatgctttg 2036676  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 2046099 - 2046053
Alignment:
Q  192 catcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 238  Q
    |||||||||||||||| ||||||  ||||||||||||||||||||||    
T  2046099 catcaacaagtcctttcacaccagattttgtttcatcaaatgctttg 2046053  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 15684372 - 15684412
Alignment:
Q  190 agcatcaacaagtcctttgacaccatcttttgtttcatcaa 230  Q
    |||||||||||||||||| ||||| ||||||| ||||||||    
T  15684372 agcatcaacaagtccttttacaccttcttttgattcatcaa 15684412  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 28713715 - 28713765
Alignment:
Q  193 atcaacaagtcctttgacaccatcttttgtttcatcaaatgctttgagctc 243  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  28713715 atcaacaaggcctttaacaccagcttttgtttcatcaaatgctttgagctc 28713765  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 28743615 - 28743665
Alignment:
Q  193 atcaacaagtcctttgacaccatcttttgtttcatcaaatgctttgagctc 243  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  28743615 atcaacaaggcctttaacaccagcttttgtttcatcaaatgctttgagctc 28743665  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 28736989 - 28737036
Alignment:
Q  193 atcaacaagtcctttgacaccatcttttgtttcatcaaatgctttgag 240  Q
    ||||||||| ||||| |||||| ||||| |||||||||||||||||||    
T  28736989 atcaacaaggcctttaacaccagcttttctttcatcaaatgctttgag 28737036  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 48909126 - 48909172
Alignment:
Q  192 catcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 238  Q
    ||||||||| |||||| |||| | |||||||||||||||||||||||    
T  48909126 catcaacaaatccttttacactagcttttgtttcatcaaatgctttg 48909172  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 16419770 - 16419816
Alignment:
Q  191 gcatcaacaagtcctttgacaccatcttttgtttcatcaaatgcttt 237  Q
    ||||||||||||||||| ||||||  ||||||||||||||| |||||    
T  16419770 gcatcaacaagtccttttacaccaaattttgtttcatcaaaagcttt 16419816  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 16499392 - 16499343
Alignment:
Q  191 gcatcaacaagtcctttgacaccatcttttgtttcatcaaatgctttgag 240  Q
    ||||||||||||||||| ||||||  |||||| |||||||| ||||||||    
T  16499392 gcatcaacaagtcctttaacaccaagttttgtatcatcaaaagctttgag 16499343  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 16443104 - 16443144
Alignment:
Q  191 gcatcaacaagtcctttgacaccatcttttgtttcatcaaa 231  Q
    ||||||||||||||||| ||||||  |||||||||||||||    
T  16443104 gcatcaacaagtcctttaacaccaagttttgtttcatcaaa 16443144  T

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