View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_high_47 (Length: 320)
Name: NF13940_high_47
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_47 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 304
Target Start/End: Original strand, 22513509 - 22513804
Alignment:
| Q |
10 |
attatactgcaaccattgttctctttttcattcacatgtaaaaactttgacgcatcacttctgcgtgtttctacttcaactgttccttctgttattagaa |
109 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |
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| T |
22513509 |
attataccgcaaccattgttctctttttcattcacatgtaaaaactttgacgcatcacttctgcgtgtttctacttcaactgttcctgctgctatcagaa |
22513608 |
T |
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| Q |
110 |
tcctcactgcttgttgtaaaccagctttcatatttt-ctatatcaattgaattcaatttgtagccgatcctttccttggcaatgtgttggtctagcaagg |
208 |
Q |
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|||||| ||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22513609 |
tcctcattgcttgttgtaaaccagctctcatatttttccctatcaattgaattcaatttgtagccgatcctttccttggcaatgtgttggtctagcaagg |
22513708 |
T |
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| Q |
209 |
taagcacatcattacaagtaacatagccataccaatgacccataatttttccatctggtccatgattaaatgtgattaaattaccagcatagttat |
304 |
Q |
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| T |
22513709 |
caagcacatcattacgagtaacatagccataccaatgacccataatttttccatctggtccatgattaaatgtgattaaattaccagcatagttat |
22513804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 31321633 - 31321523
Alignment:
| Q |
62 |
catcacttctgcgtgtttctacttcaactgttccttctgttattagaatcctcactgcttgttgtaaaccagctttcatattttctatatcaattgaatt |
161 |
Q |
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||||||||||| ||||| |||||||||||| |||| ||| ||||||||| || | | ||||||||||||||||| ||||||| ||| | ||||||||||| |
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| T |
31321633 |
catcacttctgtgtgttcctacttcaactgctcctgctgctattagaattcttagtccttgttgtaaaccagctctcatattctctctgtcaattgaatt |
31321534 |
T |
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| Q |
162 |
caatttgtagc |
172 |
Q |
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| T |
31321533 |
caatttgtagc |
31321523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 31333883 - 31333776
Alignment:
| Q |
65 |
cacttctgcgtgtttctacttcaactgttccttctgttattagaatcctcactgcttgttgtaaaccagctttcatattttctatatcaattgaattcaa |
164 |
Q |
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|||||||| ||||| |||||||||||| |||| ||| ||||| ||| || | ||||||||||| ||| ||| ||||||| ||| | || ||||||||||| |
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| T |
31333883 |
cacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccggctctcatattctctttgtcgattgaattcaa |
31333784 |
T |
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| Q |
165 |
tttgtagc |
172 |
Q |
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| T |
31333783 |
tttgtagc |
31333776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 416868 - 416803
Alignment:
| Q |
239 |
accaatgacccataatttttccatctggtccatgattaaatgtgattaaattaccagcatagttat |
304 |
Q |
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| T |
416868 |
accaatgacccataatttttccatctggtccatgactaaatgtgattaaattgccagcatacttat |
416803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 417019 - 416960
Alignment:
| Q |
182 |
ccttggcaatgtgttggtctagcaaggtaagcacatcattacaagtaacatagccatacc |
241 |
Q |
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| T |
417019 |
ccttggcaatgtgttggtctagcaaggcaggcacatcattaggagtaacatagccatacc |
416960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 405937 - 405879
Alignment:
| Q |
182 |
ccttggcaatgtgttggtctagcaaggtaagcacatcattacaagtaacatagccatac |
240 |
Q |
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| T |
405937 |
ccttggcaatatgttgatccagcaaggcaggcacatcattaggagtaacatagccatac |
405879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 172
Target Start/End: Original strand, 2041 - 2148
Alignment:
| Q |
65 |
cacttctgcgtgtttctacttcaactgttccttctgttattagaatcctcactgcttgttgtaaaccagctttcatattttctatatcaattgaattcaa |
164 |
Q |
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|||||||| ||||| |||||||||||| |||| ||| ||||| ||| || | ||||||||||| ||| ||| ||||||| ||| | || ||||||||||| |
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| T |
2041 |
cacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccggctctcatattctctttgtcgattgaattcaa |
2140 |
T |
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| Q |
165 |
tttgtagc |
172 |
Q |
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|||||||| |
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| T |
2141 |
tttgtagc |
2148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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