View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_high_51 (Length: 302)
Name: NF13940_high_51
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 36673779 - 36673509
Alignment:
| Q |
15 |
catcaaagggtcaacattgcacttggaatagcaagagggttatcatggctacatcatacatgtgatttgggcatagtgcattttagcatatgttcagaat |
114 |
Q |
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| T |
36673779 |
catcaaagggtcaacattgcacttggaatagcaagagggttatcatggctgcatcatagctgtgatttgggcatagtgcattttaatatatgttcagaat |
36673680 |
T |
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| Q |
115 |
gcatattgctagatgagaattttgaacccaaaatatccaattttggagagggcaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaa |
214 |
Q |
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| T |
36673679 |
gcatattgctagatgagaattttgaacccaaaatatccaattttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaa |
36673580 |
T |
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| Q |
215 |
ggtggacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacat |
285 |
Q |
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| T |
36673579 |
ggtggacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacat |
36673509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 36676528 - 36676264
Alignment:
| Q |
21 |
agggtcaacattgcacttggaatagcaagagggttatcatggctacatcatacatgtgatttgggcatagtgcattttagcatatgttcagaatgcatat |
120 |
Q |
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| T |
36676528 |
agggtcaacattgcatttggaatagcaagagggttatcatggctgcatcatacatgcgatttgggcatagtgcattttagcatatgttcagaatgcatat |
36676429 |
T |
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| Q |
121 |
tgctagatgagaattttgaacccaaaatatccaattttggagagggcaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgga |
220 |
Q |
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| T |
36676428 |
tgctagatgagaactttgaaccaaaaatatccaattttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgaa |
36676329 |
T |
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| Q |
221 |
cgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacat |
285 |
Q |
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| T |
36676328 |
cgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacat |
36676264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 36684201 - 36683937
Alignment:
| Q |
21 |
agggtcaacattgcacttggaatagcaagagggttatcatggctacatcatacatgtgatttgggcatagtgcattttagcatatgttcagaatgcatat |
120 |
Q |
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| T |
36684201 |
agggtcaacattgcacttggattagcaagaggattatcatggctccatcatagctgtgatttgggcatagtgcattttaatatatattcacaatgcatat |
36684102 |
T |
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| Q |
121 |
tgctagatgagaattttgaacccaaaatatccaattttggagagggcaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgga |
220 |
Q |
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| T |
36684101 |
tgctagatgagaattttgaacccaaaatatccaattttgggcaggcgaaatttatgaatcccaacattgaagatcatctcagcacgatgtttaaagtgaa |
36684002 |
T |
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| Q |
221 |
cgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacat |
285 |
Q |
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| T |
36684001 |
tgacgggaagaaggatgtctacgactttggaagtgtgctttttgaactgattacaggaaaaacat |
36683937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 36695862 - 36695793
Alignment:
| Q |
216 |
gtggacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacat |
285 |
Q |
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| T |
36695862 |
gtggacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacat |
36695793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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