View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13940_high_54 (Length: 297)

Name: NF13940_high_54
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13940_high_54
NF13940_high_54
[»] chr5 (6 HSPs)
chr5 (1-292)||(7141572-7141863)
chr5 (2-273)||(7154361-7154632)
chr5 (143-290)||(7131850-7131997)
chr5 (86-231)||(41305312-41305457)
chr5 (89-150)||(31177694-31177755)
chr5 (137-225)||(41337787-41337875)
[»] chr3 (1 HSPs)
chr3 (89-231)||(22986265-22986407)
[»] chr8 (1 HSPs)
chr8 (71-234)||(23610187-23610350)
[»] chr6 (2 HSPs)
chr6 (154-233)||(12425274-12425353)
chr6 (156-233)||(12268332-12268409)
[»] chr4 (1 HSPs)
chr4 (154-233)||(55954947-55955026)
[»] chr2 (1 HSPs)
chr2 (188-233)||(41795747-41795792)


Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 7141863 - 7141572
Alignment:
Q  1 cttcatccgatttgggagttcccagttaaagtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctc 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141863 cttcatctgatttgggagttcccagttaaagtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctc 7141764  T
Q  101 cttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141763 cttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaat 7141664  T
Q  201 atttaggatctcttcctattgcccatgcatttataaagactgtagtattttttggtatatcatacccatctattttggttagttctgtgctc 292  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141663 atttaggatctcttcctattgcccacgcatttataaagactgtagtattttttggtatatcatacccatctattttggttagttctgtgctc 7141572  T

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Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 2 - 273
Target Start/End: Complemental strand, 7154632 - 7154361
Alignment:
Q  2 ttcatccgatttgggagttcccagttaaagtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctcc 101  Q
    |||||| ||||||| |||||||| ||||| ||||| || |||| ||| | |||||  |||||||| |||| |||||| | ||| || ||||||||||| |    
T  7154632 ttcatctgatttggtagttcccaattaaaatgatatagtaataaagcaagaggaagcataacactagctataccaaatgacatgcctggacacattcttc 7154533  T
Q  102 ttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaata 201  Q
    ||||||| || |||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||    
T  7154532 ttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaata 7154433  T
Q  202 tttaggatctcttcctattgcccatgcatttataaagactgtagtattttttggtatatcatacccatctat 273  Q
    ||  ||||||||| | | ||||||||||||||| |  ||| |||||||||||||||| ||||| ||||||||    
T  7154432 ttgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctat 7154361  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 143 - 290
Target Start/End: Complemental strand, 7131997 - 7131850
Alignment:
Q  143 aaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatttataaagactg 242  Q
    ||||||||  ||||| | ||||| ||||||||| ||||| ||||||||||| ||||||||| |||||| ||| | || |||||| |||| || | ||||     
T  7131997 aaatcaatagaactaccttcaaatctctctggattaaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactt 7131898  T
Q  243 tagtattttttggtatatcatacccatctattttggttagttctgtgc 290  Q
    |||| ||||||||||||||||| ||||| || ||||||| ||| ||||    
T  7131897 tagtcttttttggtatatcataaccatcaatgttggttaattcagtgc 7131850  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 231
Target Start/End: Complemental strand, 41305457 - 41305312
Alignment:
Q  86 cccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctct 185  Q
    ||||||||||| ||||||||||| || || || ||||| || ||||   | ||||||||||||||  | |||| | |||||||||| ||  |||| ||||    
T  41305457 cccggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactct 41305358  T
Q  186 cagcatcattccaatatttaggatctcttcctattgcccatgcatt 231  Q
    |||| |||  |||||| || ||||||||||| || ||||| |||||    
T  41305357 cagcttcaacccaatactttggatctcttccaatcgcccaagcatt 41305312  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 31177694 - 31177755
Alignment:
Q  89 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaat 150  Q
    ||||||||||| |||||||| ||||| || |||||||| |||||  | ||||||||||||||    
T  31177694 ggacacattcttcttccagcaccgaacggtatgtactcaaagtttgtacctttgaaatcaat 31177755  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 41337875 - 41337787
Alignment:
Q  137 cctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgccca 225  Q
    ||||||||||||||  | |||| | |||||||||| ||  |||| |||||||| |||  |||||| || ||||||||||| ||||||||    
T  41337875 cctttgaaatcaattgagctattaacaaacctctcaggtttaaaactctcagcttcaacccaatactttggatctcttccaattgccca 41337787  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 89 - 231
Target Start/End: Original strand, 22986265 - 22986407
Alignment:
Q  89 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcag 188  Q
    ||||| |||||||||||||| || || ||||||||||| || ||| ||||||||||||||||  ||||||||  ||||||||| |||  |||| | || |    
T  22986265 ggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaacttatcgg 22986364  T
Q  189 catcattccaatatttaggatctcttcctattgcccatgcatt 231  Q
      |||||||||||||||||||| | ||| || ||||| |||||    
T  22986365 ggtcattccaatatttaggatcccgtccaatggcccaagcatt 22986407  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 23610187 - 23610350
Alignment:
Q  71 aaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctct 170  Q
    |||||| || |||| || ||||| |||||||| ||||| || || |||||| |||| || ||| |||||  |||||||||  | ||||||  |||||| |    
T  23610187 aaaccatagttcatgccgggacaaattctcctaccagcaccaaatggaatgaactcaaaattagttcctgagaaatcaatagagctatcaataaaccttt 23610286  T
Q  171 ctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatttat 234  Q
    | |||  |||| | || |  |||||||||||||||||||| |||||||||||||| ||||||||    
T  23610287 caggataaaacttatctgggtcattccaatatttaggatcccttcctattgcccaagcatttat 23610350  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 12425274 - 12425353
Alignment:
Q  154 actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 233  Q
    |||||||| ||||||||| || |||||| |||||||||||  ||||| ||  ||||||||||| ||||||||||||||||    
T  12425274 actatcatgaaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccatgcattta 12425353  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 12268409 - 12268332
Alignment:
Q  156 tatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 233  Q
    |||||| ||||||||| || |||||| |||| ||||||  |||||  || ||||||||||| ||||||||||||||||    
T  12268409 tatcatgaaacctctcaggtataaacttctctgcatcagaccaatgattgggatctcttccaattgcccatgcattta 12268332  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 55954947 - 55955026
Alignment:
Q  154 actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 233  Q
    |||||||| |||||| || || |||||| |||  ||||||| ||||| ||| ||||||||||| ||||||||||||||||    
T  55954947 actatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcattta 55955026  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 41795747 - 41795792
Alignment:
Q  188 gcatcattccaatatttaggatctcttcctattgcccatgcattta 233  Q
    |||||||  |||||||| ||||||||||| ||||||||||||||||    
T  41795747 gcatcatatcaatatttgggatctcttccgattgcccatgcattta 41795792  T

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