View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_high_56 (Length: 288)
Name: NF13940_high_56
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 56 - 265
Target Start/End: Complemental strand, 46368520 - 46368311
Alignment:
| Q |
56 |
accaatcccaaaccccaagactctgattctcactctcacacccctgattacgctccatatcccaaacttgacccaaacgacgtcgcaccaccaccaccac |
155 |
Q |
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| T |
46368520 |
accaatcccaaaccccaagactctgattctcactctcacacccctgattacgctccatatcccaaacttgacccaaacgacgtcgcaccaccaccaccac |
46368421 |
T |
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| Q |
156 |
ccgttgcaactgaatctcgggccaccgatgctgccaccaccatgcccgccgaatctaatccttatgtatctccagcaccagttcccgcacccacttctgc |
255 |
Q |
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| T |
46368420 |
ccgttgcaactgaatctcgggccaccgatgctgccaccaccatgcccgccgaatctaatccttatgtatctccagcaccagttcccgcacccacttctgc |
46368321 |
T |
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| Q |
256 |
taagagtaat |
265 |
Q |
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|||||||||| |
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| T |
46368320 |
taagagtaat |
46368311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 46368547 - 46368516
Alignment:
| Q |
17 |
aatatgagtagtgctggtgatcaacctaccaa |
48 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
46368547 |
aatatgagtagtgctggtgatcaacctaccaa |
46368516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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