View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13940_high_63 (Length: 253)
Name: NF13940_high_63
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_63 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30622014 - 30621781
Alignment:
| Q |
1 |
acatgttatgattagtgatggatgctgcgtttgtgcctatttaaagataaccttctatatttacttttcaaatagaaaaagaatcaattgaatttaattg |
100 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30622014 |
acatgttatggttagtgatggatgc---gtttgtgcctatttaaagatgaccttctatatttacttttcaaatagaaaaagaatcaattgaatttaattg |
30621918 |
T |
|
| Q |
101 |
cattgatttttaatttaattcattgaaatatgtttttggtgcagtaagaaggtgttcaataagctccataatnnnnnnnnnttcaaacgaacacttttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
30621917 |
cattgatttttaatttaattcattgaaatatgtttttggtgtagtaagaaggtgttcaataagctccataat--aaaaaatttcaaatgaacacttttaa |
30621820 |
T |
|
| Q |
201 |
gcaattaatgatagtatgctaaataagctaattcatctc |
239 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
30621819 |
gcaattagtgatagtaagctaaataagctaattaatctc |
30621781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 150
Target Start/End: Original strand, 28044970 - 28045082
Alignment:
| Q |
37 |
ctatttaaagataaccttctatatttacttttcaaatagaaaaagaatcaattgaatttaattgcattgatttttaatttaattcattgaaatatgtttt |
136 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| ||||||||||||| |
|
|
| T |
28044970 |
ctatttaaagatgatattctatatttacttttcaaatagaaaaagaatcaattaaatttaattgcattgaattttaaattaattca-tgaaatatgtttt |
28045068 |
T |
|
| Q |
137 |
tggtgcagtaagaa |
150 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
28045069 |
tggtgtggtaagaa |
28045082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 17542991 - 17543053
Alignment:
| Q |
54 |
tctatatttacttttcaaatagaaaaagaatcaattgaatttaattgcattgatttttaattt |
116 |
Q |
| |
|
|||||||| || ||| |||| || |||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
17542991 |
tctatattaacattttaaattgacaaagaatcaaatgaatttaattgcattgatgtttaattt |
17543053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University