View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_high_65 (Length: 250)
Name: NF13940_high_65
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_65 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 28127334 - 28127552
Alignment:
| Q |
13 |
cataggatgatataatggtaaaaaataataaggtacacataagtgataactaaatatgtgatattgtacttgtattaatcaaatccacaatcaccagaaa |
112 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28127334 |
cataggatgacataatggtaaaaaataataaagtacacataagtgataactaaatatgtgatattgtacttgtattaatcaaatccacaatcaccagaaa |
28127433 |
T |
|
| Q |
113 |
tccatcagtcaagtctaggtcctaatattatccttaaatttcttcgtatgaatgaaaagcgactaagcgaggggtggcttccttgccctggtagcttgct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28127434 |
tccatcagtcaagtctaggtcctaatattatccttaaatttcttcgtatgaatgaaaagcgactaagcgaggggtggcttccttgccctggtagcttgct |
28127533 |
T |
|
| Q |
213 |
caaaatcataagcaatctc |
231 |
Q |
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||||||||||||||||||| |
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| T |
28127534 |
caaaatcataagcaatctc |
28127552 |
T |
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