View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_high_66 (Length: 249)
Name: NF13940_high_66
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_66 |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 18046939 - 18046691
Alignment:
| Q |
1 |
taacttgtaggaagatgatgatgttggtgatagccgtatacccccacgagatgacaaataacgtgttttgttttcaatgtttagttcttctccttcaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18046939 |
taacttgtaggaagatgatgatgttggtgatagccgtatacccctacgagatgacaaataacgtgttttgttttcaatgtttagttcttctccttcaacc |
18046840 |
T |
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| Q |
101 |
acgacatattcaaccccggtcactttttgcgctagataatgcataatgtcatgcattttacaggtacttattccaccacaatcgtctatagtaacatctt |
200 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18046839 |
acgacatattcatccccggtcactacttgcgctagataatgcataatgtcatgcattttacaggtacttattccaccacaatcgtctatagtaacatctc |
18046740 |
T |
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| Q |
201 |
gaaagaaagacattgacagcaaactcatgaagtactcatgaccaacatc |
249 |
Q |
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| T |
18046739 |
gaaagaaagacattgacagcaaactcatgaagtactcatgaccaacatc |
18046691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 18034214 - 18034458
Alignment:
| Q |
1 |
taacttgtaggaagatgatgatgttggtgatagccgtatacccccacgagatgacaaataacgtgttttgttttcaatgtttagttcttctccttcaacc |
100 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||| | |||||||||||||||||||||||| |
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| T |
18034214 |
taacttgtaggaagatgatgatgttagtgatagttgtatacccctacgagatgacaaataacgtgttctgtttcctatgtttagttcttctccttcaacc |
18034313 |
T |
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| Q |
101 |
acgacatattcaaccccggtcactttttgcgctagataatgcataatgtcatgcattttacaggtacttattccaccacaatcgtctatagtaacatctt |
200 |
Q |
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| T |
18034314 |
acgacatattcattctcggtcactagttgcgctagatcatacataatgtcatgcattttacaggtgcttattccatcacaatcgtctatagtaacatctt |
18034413 |
T |
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| Q |
201 |
gaaagaaagacattgacagcaaactcatgaagtactcatgaccaa |
245 |
Q |
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| T |
18034414 |
gaaagaaagacattgacagcaaactcatgaagtactcatgaccaa |
18034458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 4398387 - 4398635
Alignment:
| Q |
1 |
taacttgtaggaagatgatgatgttggtgatagccgtatacccccacgagatgacaaataacgtgttttgttttcaatgtttagttcttctccttcaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4398387 |
taacttgtaggaagatgatgatgttggtgatagccgtatacccctacgagatgacaaataacgtgttttgttttcaatgtttagttcttctccttcaacc |
4398486 |
T |
|
| Q |
101 |
acgacatattcaaccccggtcactttttgcgctagataatgcataatgtcatgcattttacaggtacttattccaccacaatcgtctatagtaacatctt |
200 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4398487 |
acgacatattcatccccggtcactacttgcgctagataatgcataatgtcatgcattttacaggtacttattccaccacaatcgtctatagtaacatctc |
4398586 |
T |
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| Q |
201 |
gaaagaaagacattgacagcaaactcatgaagtactcatgaccaacatc |
249 |
Q |
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| T |
4398587 |
gaaagaaagacattgacagcaaactcatgaagtactcatgaccaacatc |
4398635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 4498255 - 4498007
Alignment:
| Q |
1 |
taacttgtaggaagatgatgatgttggtgatagccgtatacccccacgagatgacaaataacgtgttttgttttcaatgtttagttcttctccttcaacc |
100 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||| | |||||||||||||||||||||||| |
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| T |
4498255 |
taacttgtaggaagatgatgagattggtgatagttgtatacccctacgagatgacaaataacgtgttctgtttcctatgtttagttcttctccttcaacc |
4498156 |
T |
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| Q |
101 |
acgacatattcaaccccggtcactttttgcgctagataatgcataatgtcatgcattttacaggtacttattccaccacaatcgtctatagtaacatctt |
200 |
Q |
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|||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4498155 |
acgacatattcattcccggtcactagttgcgctagatcatgcataatgtcatgcattttacaggtacttattccaccacaatcgtctatagaaacatctt |
4498056 |
T |
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| Q |
201 |
gaaagaaagacattgacagcaaactcatgaagtactcatgaccaacatc |
249 |
Q |
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| T |
4498055 |
gaaagaaagacattgacagcaaactcatgaagtactcatgaccaacatc |
4498007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 4519315 - 4519071
Alignment:
| Q |
1 |
taacttgtaggaagatgatgatgttggtgatagccgtatacccccacgagatgacaaataacgtgttttgttttcaatgtttagttcttctccttcaacc |
100 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||| | |||||||||||||||||||||||| |
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| T |
4519315 |
taacttgtaggaagatgatgatgttagtgatagttgtatacccctacgagatgacaaataacgtgttctgtttcctatgtttagttcttctccttcaacc |
4519216 |
T |
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| Q |
101 |
acgacatattcaaccccggtcactttttgcgctagataatgcataatgtcatgcattttacaggtacttattccaccacaatcgtctatagtaacatctt |
200 |
Q |
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|||||||||||| | |||||||| ||||||||||| || |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
4519215 |
acgacatattcattctcggtcactagttgcgctagatcatacataatgtcatgcattttacaggtgcttattccatcacaatcgtctatagtaacatctt |
4519116 |
T |
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| Q |
201 |
gaaagaaagacattgacagcaaactcatgaagtactcatgaccaa |
245 |
Q |
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| T |
4519115 |
gaaagaaagacattgacagcaaactcatgaagtactcatgaccaa |
4519071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 48 - 249
Target Start/End: Complemental strand, 4529459 - 4529258
Alignment:
| Q |
48 |
gagatgacaaataacgtgttttgttttcaatgtttagttcttctccttcaaccacgacatattcaaccccggtcactttttgcgctagataatgcataat |
147 |
Q |
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||||||| ||| |||||||||||||| |||||||| ||||||||||||| ||| |||||||||| |||| || | || ||||||| |||||||| |
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| T |
4529459 |
gagatgataaaaaacgtgttttgtttccaatgtttgcttcttctccttcagccatgacatattcattcccgaccattagctgtgctagatcatgcataag |
4529360 |
T |
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| Q |
148 |
gtcatgcattttacaggtacttattccaccacaatcgtctatagtaacatcttgaaagaaagacattgacagcaaactcatgaagtactcatgaccaaca |
247 |
Q |
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||||||||||||||| ||| || ||||||||||||||| ||| | |||||| ||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
4529359 |
gtcatgcattttacaattacaaatgtcaccacaatcgtctacagtgatatcttggaagaaggacattgacagcaaactcatgaagtactcatggccaaca |
4529260 |
T |
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| Q |
248 |
tc |
249 |
Q |
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|| |
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| T |
4529259 |
tc |
4529258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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