View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13940_high_7 (Length: 654)

Name: NF13940_high_7
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13940_high_7
NF13940_high_7
[»] chr4 (54 HSPs)
chr4 (17-654)||(2621100-2621737)
chr4 (464-621)||(2367648-2367805)
chr4 (214-591)||(2467213-2467587)
chr4 (214-354)||(2518904-2519044)
chr4 (456-591)||(2486229-2486364)
chr4 (220-355)||(2547221-2547356)
chr4 (214-337)||(2533984-2534107)
chr4 (479-574)||(5106333-5106428)
chr4 (456-574)||(5102106-5102224)
chr4 (65-157)||(2373666-2373761)
chr4 (468-589)||(2547466-2547587)
chr4 (285-354)||(5102326-5102395)
chr4 (220-344)||(5106558-5106685)
chr4 (480-601)||(12124770-12124891)
chr4 (66-157)||(2368103-2368197)
chr4 (477-577)||(2472035-2472135)
chr4 (221-272)||(2367982-2368033)
chr4 (220-319)||(2490805-2490904)
chr4 (468-591)||(2491062-2491185)
chr4 (64-170)||(2471574-2471680)
chr4 (456-574)||(2519155-2519273)
chr4 (214-272)||(2525426-2525484)
chr4 (222-272)||(5035301-5035351)
chr4 (222-328)||(12124524-12124630)
chr4 (456-517)||(2382562-2382623)
chr4 (101-186)||(2382915-2383000)
chr4 (216-317)||(2475953-2476054)
chr4 (292-356)||(2361198-2361262)
chr4 (224-272)||(2546825-2546873)
chr4 (57-165)||(5102506-5102614)
chr4 (456-591)||(2525679-2525814)
chr4 (222-272)||(2373548-2373598)
chr4 (110-156)||(12124406-12124452)
chr4 (480-621)||(2373212-2373352)
chr4 (218-345)||(2393839-2393965)
chr4 (381-570)||(2477421-2477604)
chr4 (130-174)||(2167816-2167860)
chr4 (216-264)||(2363162-2363210)
chr4 (292-352)||(2381630-2381690)
chr4 (462-562)||(2391036-2391136)
chr4 (292-352)||(2391258-2391318)
chr4 (64-172)||(2477095-2477203)
chr4 (216-248)||(2625602-2625634)
chr4 (117-157)||(12126466-12126506)
chr4 (384-443)||(2486145-2486204)
chr4 (456-591)||(5035544-5035679)
chr4 (67-174)||(5106722-5106829)
chr4 (546-588)||(1517029-1517071)
chr4 (292-345)||(2382747-2382800)
chr4 (292-345)||(2482529-2482582)
chr4 (302-339)||(2486066-2486103)
chr4 (220-272)||(2460283-2460335)
chr4 (220-272)||(2471733-2471785)
chr4 (506-594)||(12126852-12126940)
[»] chr7 (1 HSPs)
chr7 (477-574)||(2576415-2576512)
[»] chr1 (2 HSPs)
chr1 (477-577)||(15837979-15838079)
chr1 (216-252)||(7555124-7555160)
[»] chr8 (1 HSPs)
chr8 (213-266)||(18314718-18314771)
[»] chr5 (2 HSPs)
chr5 (546-602)||(12846948-12847004)
chr5 (221-265)||(28673354-28673398)
[»] chr6 (2 HSPs)
chr6 (291-354)||(6423906-6423969)
chr6 (292-354)||(10579090-10579152)


Alignment Details
Target: chr4 (Bit Score: 610; Significance: 0; HSPs: 54)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 17 - 654
Target Start/End: Complemental strand, 2621737 - 2621100
Alignment:
Q  17 agatattcctttgcttcattaaaaccaatcagtcacgaccacatctcgaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621737 agatattcctttgcttcattaaaaccaatcagtcacgaccacatctcgaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaa 2621638  T
Q  117 ttacctgataaattaattttgcggagtttgggaagtgccaacaaccgatcatcatcatctagctcaaaatcatagctagtagcaataacaggatggctaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621637 ttacctgataaattaattttgcggagtttgggaagtgccaacaaccgatcatcatcatctagctcaaaatcatagctagtagcaataacaggatggctaa 2621538  T
Q  217 ggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaattttt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  2621537 ggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaattttt 2621438  T
Q  317 catgtttttggagaaagctcgcaacccatctgtaggaatattgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggatatatta 416  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621437 catatttttggagaaagctcgcaacccatctgtaggaatattgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggatatatta 2621338  T
Q  417 gtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatgg 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621337 gtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatgg 2621238  T
Q  517 ttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagaggttccaagtaatggttgttgtcgcc 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  2621237 ttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggatacgagggagagaggttcccagtaatggttgttgtcgcc 2621138  T
Q  617 gtcgtcaactaactggaagatacactcccaccactcct 654  Q
     ||||||||||||| |||||||||||||||||||||||    
T  2621137 atcgtcaactaacttgaagatacactcccaccactcct 2621100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 464 - 621
Target Start/End: Complemental strand, 2367805 - 2367648
Alignment:
Q  464 gagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggac 563  Q
    |||||||||||  || |||||||| | ||| ||||||  || ||||||||| ||||||||||| ||||  |||||||| || |||||||||||||||||     
T  2367805 gagggatgtgaggttggggaacctttggaaaaggcgataaaggaaagggattgttttatcggacattgctatggagaatcggagacggttggtgatggag 2367706  T
Q  564 aaaaactgtttggacacgagggagagaggttccaagtaatggttgttgtcgccgtcgt 621  Q
    | ||| |||||||| |||| ||| ||||||||||||||  |||||||||||| |||||    
T  2367705 agaaattgtttggagacgatggaaagaggttccaagtagcggttgttgtcgctgtcgt 2367648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 214 - 591
Target Start/End: Original strand, 2467213 - 2467587
Alignment:
Q  214 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattg---attcggtaacaagtgaaagatgtcaa 310  Q
    ||||| |||| |||||||||||||||||||||||||||| |||||| ||||| ||||||  ||| | |      ||||||||||||||||  ||||||||    
T  2467213 taaggatgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaa 2467312  T
Q  311 atttttcatgtttttggagaaagctcgcaacccatctgtaggaatattgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggat 410  Q
    ||||||||| | |||||||||||||||||||||||||| |||||   |  ||| |   ||| ||| ||| || ||||||| ||| | ||||||||||||     
T  2467313 atttttcatctctttggagaaagctcgcaacccatctgcaggaaccgt--tatgggg-tggtagagagtgagggatttgaggtccaaagggaaagtggag 2467409  T
Q  411 atattagtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaag 510  Q
    || || ||||||||  ||| |||||||||||||   ||||     |||||||  |  ||| ||||||| |||||||| || ||||| ||| |||  ||||    
T  2467410 attttggtaagaagtgcgttgaggtcactttctaccgagaga---gtgatgtcaattgatctgatattggggaacctttcaaagagacgatgaagtaaag 2467506  T
Q  511 ggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagag 591  Q
    |||| |||   ||||| || | || |||||| || |||| |||||| ||||||||||||||||| || |||| ||||||||    
T  2467507 ggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagag 2467587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 214 - 354
Target Start/End: Original strand, 2518904 - 2519044
Alignment:
Q  214 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatt 313  Q
    ||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |||| |  || |||   |||||||||| | ||||||||||    
T  2518904 taaggatgagttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaatt 2519003  T
Q  314 tttcatgtttttggagaaagctcgcaacccatctgtaggaa 354  Q
    |||||||||||  || |||||| ||||||| ||| ||||||    
T  2519004 tttcatgttttgagacaaagcttgcaacccttctttaggaa 2519044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 456 - 591
Target Start/End: Original strand, 2486229 - 2486364
Alignment:
Q  456 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 555  Q
    ||||| ||| ||||||| | |||||||||||  |  ||||| ||| ||| ||||||||| ||||| |||||||||||||  ||||| || ||||||||||    
T  2486229 gtgatattgtgggatgtaacattagggaacccataaaagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttgg 2486328  T
Q  556 tgatggacaaaaactgtttggacacgagggagagag 591  Q
    ||||||||| ||||||||| || |||||||||||||    
T  2486329 tgatggacagaaactgttttgagacgagggagagag 2486364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 220 - 355
Target Start/End: Original strand, 2547221 - 2547356
Alignment:
Q  220 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcat 319  Q
    |||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||     |||||  | ||||| ||| ||| ||||||||||||||    
T  2547221 tgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcat 2547320  T
Q  320 gtttttggagaaagctcgcaacccatctgtaggaat 355  Q
     ||||  || |||||||||||||||| || ||||||    
T  2547321 cttttcagacaaagctcgcaacccatttgcaggaat 2547356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 214 - 337
Target Start/End: Original strand, 2533984 - 2534107
Alignment:
Q  214 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatt 313  Q
    ||||| |||||||||| ||||||||||||||||||||||  ||||| ||||||||||||  ||| |   | ||| | |||||||||| |||||| |||||    
T  2533984 taaggatgagttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatt 2534083  T
Q  314 tttcatgtttttggagaaagctcg 337  Q
    |||||| || ||||| ||||||||    
T  2534084 tttcatcttcttggacaaagctcg 2534107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 479 - 574
Target Start/End: Complemental strand, 5106428 - 5106333
Alignment:
Q  479 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 574  Q
    ||||||||| | |||||||||| |||||||||||||||||| ||  | ||||||||  ||||| ||  ||||||||||||||||||||||||||||    
T  5106428 agggaaccttttgaagaggcgatgaatgaaagggatggtttgattagtgattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttt 5106333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 574
Target Start/End: Complemental strand, 5102224 - 5102106
Alignment:
Q  456 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 555  Q
    ||||||||||| |||||||  ||||||||||| ||||| ||| ||||||||||||||||||||  ||| | ||||||||  ||||| || ||||  || |    
T  5102224 gtgatgttgagtgatgtgacgttagggaacctttcgaaaaggagaggaatgaaagggatggttcgatcagtgattgtgaccgagaatcgaagactattag 5102125  T
Q  556 tgatggacaaaaactgttt 574  Q
    |||| ||||||||||||||    
T  5102124 tgatagacaaaaactgttt 5102106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 2373761 - 2373666
Alignment:
Q  65 aagaaggttacagttcttgcagagagagttaacatattggcgatc---gatgaaattacctgataaattaattttgcggagtttgggaagtgccaa 157  Q
    |||||||||||| || ||| ||||| |||||| | ||||| ||||   |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  2373761 aagaaggttacaatttttgaagagatagttaatagattggtgatctttgatgcaattacctgataaattaatcttgcggagtttgggaagtgccaa 2373666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 468 - 589
Target Start/End: Original strand, 2547466 - 2547587
Alignment:
Q  468 gatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaa 567  Q
    |||||||| ||||||||||| | ||||| | |||||| | || ||||| | | |  |||||||||||  |||||||| ||||||||||||||||||| ||    
T  2547466 gatgtgatgttagggaacctttggaagaagtgaggaagggaaaggatgatatgactggagattgtgactgagaaccggagacggttggtgatggacagaa 2547565  T
Q  568 actgtttggacacgagggagag 589  Q
    |||||||||| |||| ||||||    
T  2547566 actgtttggagacgatggagag 2547587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 5102395 - 5102326
Alignment:
Q  285 attcggtaacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaa 354  Q
    |||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||| | ||||||||    
T  5102395 attcggtaacaagtgatagatgtcaaatttttcatcttttgggagaatgctcgcaacccttttgtaggaa 5102326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 220 - 344
Target Start/End: Complemental strand, 5106685 - 5106558
Alignment:
Q  220 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggatttt---attgattcggtaacaagtgaaagatgtcaaattttt 316  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||| |||||   |       |   |||||||||||||||| |||||||||||||||    
T  5106685 tgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtctacacccgaagcaattcggtaacaagtgatagatgtcaaattttt 5106586  T
Q  317 catgtttttggagaaagctcgcaaccca 344  Q
    ||| |||  |||||||||||||||||||    
T  5106585 catctttagggagaaagctcgcaaccca 5106558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 480 - 601
Target Start/End: Original strand, 12124770 - 12124891
Alignment:
Q  480 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 579  Q
    |||||||| | |||||||||   || ||||||||| |||| ||| ||||||| |||||| ||  | ||||||||||||||||| | ||| |||||||| |    
T  12124770 gggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggaaaattggagacggttggtgatggagagaaattgtttggaga 12124869  T
Q  580 cgagggagagaggttccaagta 601  Q
    | | ||||||||||||||||||    
T  12124870 caatggagagaggttccaagta 12124891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 2368197 - 2368103
Alignment:
Q  66 agaaggttacagttcttgcagagagagttaacatattggcgatcgatga---aattacctgataaattaattttgcggagtttgggaagtgccaa 157  Q
    ||||||| |||||||||| ||||| |||||| | |||| |||||  |||   ||||||| ||||||||||| |||||||||||||||||||||||    
T  2368197 agaaggtcacagttcttgaagagatagttaatagattgtcgatctttgatccaattaccagataaattaatcttgcggagtttgggaagtgccaa 2368103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 477 - 577
Target Start/End: Original strand, 2472035 - 2472135
Alignment:
Q  477 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 576  Q
    ||||||||||| ||||||||| || ||| ||||||||| |||| |  | ||||||||| |||||| |  ||||| ||||||||||| |||||||||||||    
T  2472035 ttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcagagacgattggtgatggagaaaaactgtttgg 2472134  T
Q  577 a 577  Q
    |    
T  2472135 a 2472135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 2368033 - 2367982
Alignment:
Q  221 gagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 272  Q
    |||||||||||||||||||||||||||||||| |||||| |||||| |||||    
T  2368033 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttg 2367982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 220 - 319
Target Start/End: Original strand, 2490805 - 2490904
Alignment:
Q  220 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcat 319  Q
    ||||||| |||||||||||||||||||||||||  || || ||||||||||||  |||     | ||||| |||||||||| ||||||||||||||||||    
T  2490805 tgagttcgtcgagtaaagggaaacaatcagcaataaaaaagagatcattcttgttgataaacctcattcgataacaagtgagagatgtcaaatttttcat 2490904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 468 - 591
Target Start/End: Original strand, 2491062 - 2491185
Alignment:
Q  468 gatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaa 567  Q
    ||||| || ||||||||||| || ||||| |||  || ||||||||| |||  ||||||||||||||  || || || |||||||| |||||||||| ||    
T  2491062 gatgtaatgttagggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaa 2491161  T
Q  568 actgtttggacacgagggagagag 591  Q
    ||||||| || ||||| |||||||    
T  2491162 actgttttgagacgagtgagagag 2491185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 2471574 - 2471680
Alignment:
Q  64 gaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccg 163  Q
    ||||||||||||| ||||||||||||  | ||| | |||||||| | || || |||||  |||||| ||| |||||||||||||||||| |||||||  |    
T  2471574 gaagaaggttacaattcttgcagagatcgataatagattggcgaaccatcaatttaccatataaataaatcttgcggagtttgggaagttccaacaattg 2471673  T
Q  164 atcatca 170  Q
    |||||||    
T  2471674 atcatca 2471680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 456 - 574
Target Start/End: Original strand, 2519155 - 2519273
Alignment:
Q  456 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 555  Q
    ||||||||||| ||||| |  || |||||||| || ||||| ||| ||| ||||||||| |||| ||| ||||||||||  ||| | || | ||||||||    
T  2519155 gtgatgttgagtgatgtaacgttggggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttgg 2519254  T
Q  556 tgatggacaaaaactgttt 574  Q
    ||||||||| |||||||||    
T  2519255 tgatggacagaaactgttt 2519273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 2525426 - 2525484
Alignment:
Q  214 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 272  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||||  ||||||||||||    
T  2525426 taaggatgagttcttcgagtagagggaaacaatcagcaatgaagagcagatcattcttg 2525484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 5035301 - 5035351
Alignment:
Q  222 agttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 272  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  5035301 agttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttg 5035351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 328
Target Start/End: Original strand, 12124524 - 12124630
Alignment:
Q  222 agttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcatgt 321  Q
    |||||||| |||||||||||||||||||||| |||||| |||||| ||||  | ||   | | |||| | ||||||||| ||| |||||||||||||| |    
T  12124524 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagagaggtcaaatttttcatct 12124623  T
Q  322 ttttgga 328  Q
    |||||||    
T  12124624 ttttgga 12124630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 456 - 517
Target Start/End: Complemental strand, 2382623 - 2382562
Alignment:
Q  456 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggt 517  Q
    ||||| ||||||||||||| |||||||| |||   |||||||||||||||||||||||||||    
T  2382623 gtgatattgagggatgtgacattagggagccttcggaagaggcgaggaatgaaagggatggt 2382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 2383000 - 2382915
Alignment:
Q  101 ttggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccgatcatcatcatctagctcaaaat 186  Q
    ||||| ||||||| |||||||  | |||||||| || |||||||||||||||||||| ||  ||| ||||||||||||| ||||||    
T  2383000 ttggctatcgatggaattaccatacaaattaatctttcggagtttgggaagtgccaaaaattgattatcatcatctagcacaaaat 2382915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 317
Target Start/End: Original strand, 2475953 - 2476054
Alignment:
Q  216 aggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttt 315  Q
    ||||||| ||||||||||||||| || |||| ||| || ||||| ||||||| |||| |||| | |||  ||  ||||||||||| ||||||||||||||    
T  2475953 aggttgatttcttcgagtaaaggaaagcaattagctagaaagaagagatcatccttgtggatataattctttttgtaacaagtgagagatgtcaaatttt 2476052  T
Q  316 tc 317  Q
    ||    
T  2476053 tc 2476054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 2361262 - 2361198
Alignment:
Q  292 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaata 356  Q
    ||||||||| |||||||||||||||||| |||||||| |||||||| | ||||  ||||||||||    
T  2361262 aacaagtgagagatgtcaaatttttcatttttttggacaaagctcgtagcccacttgtaggaata 2361198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 2546825 - 2546873
Alignment:
Q  224 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 272  Q
    ||||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  2546825 ttcttcgagtaaaggaaaacaatcagcaatgaagaataaatcattcttg 2546873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 5102614 - 5102506
Alignment:
Q  57 acatctcgaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgcca 156  Q
    |||||| ||||||||| ||||||| |||| |||  ||||| | |||||  | | ||||||||||  ||||||  ||| ||||||||||||||||||||||    
T  5102614 acatcttgaagaaggtcacagttcctgcaaagatggttaatagattgggtacctatgaaattacgagataaaacaatcttgcggagtttgggaagtgcca 5102515  T
Q  157 acaaccgat 165  Q
    |||| ||||    
T  5102514 acaatcgat 5102506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 456 - 591
Target Start/End: Original strand, 2525679 - 2525814
Alignment:
Q  456 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 555  Q
    ||||| ||||| ||||  || ||||||||||| || ||||| |||  ||  |||||||| |||  || |||||||||||   |||| || |||| |||||    
T  2525679 gtgatattgagtgatgcaatgttagggaacctttcaaagagacgattaagaaaagggatagttgcattggagattgtgaccaagaatcgaagactgttgg 2525778  T
Q  556 tgatggacaaaaactgtttggacacgagggagagag 591  Q
    ||||||||| ||||||||| || |||||||||||||    
T  2525779 tgatggacagaaactgttttgagacgagggagagag 2525814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 2373598 - 2373548
Alignment:
Q  222 agttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 272  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||| |||||    
T  2373598 agttcttcgagcaaagggaaacaatcagcaatgaagaagagatcactcttg 2373548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 12124406 - 12124452
Alignment:
Q  110 gatgaaattacctgataaattaattttgcggagtttgggaagtgcca 156  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  12124406 gatgcaattaccagataaattaatcttgcggagtttgggaagtgcca 12124452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 621
Target Start/End: Complemental strand, 2373352 - 2373212
Alignment:
Q  480 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 579  Q
    |||||||| | ||||||||||  || |||||| || ||||||||| | ||||  |||||||| || ||| | ||||||||||| | ||| |||||||| |    
T  2373352 gggaacctttggaagaggcgattaaggaaaggaattgttttatcg-acattgctatggagaatcggagatgattggtgatggagagaaattgtttggaaa 2373254  T
Q  580 cgagggagagaggttccaagtaatggttgttgtcgccgtcgt 621  Q
    | | |||||||||||| |||||  || |||||| ||||||||    
T  2373253 caacggagagaggttcgaagtagcggctgttgttgccgtcgt 2373212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 345
Target Start/End: Complemental strand, 2393965 - 2393839
Alignment:
Q  218 gttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaa-ttttt 316  Q
    ||||||||||| ||||||||||||| ||||||||| ||| || ||| ||||||||| |||  || | |||   ||  | |||| |||||||||| |||||    
T  2393965 gttgagttcttggagtaaagggaaaaaatcagcaatgaaaaagagaccattcttgcagataatagtcatt--ttagaatgtgagagatgtcaaatttttt 2393868  T
Q  317 catgtttttggagaaagctcgcaacccat 345  Q
    ||| |||| ||| ||||||||||||||||    
T  2393867 catcttttgggacaaagctcgcaacccat 2393839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 570
Target Start/End: Original strand, 2477421 - 2477604
Alignment:
Q  381 agcgatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattag 480  Q
    |||||| ||| ||||| ||  ||||||||||| |  ||||||||||| || |||||||||||| | ||||     |||||||| ||||||||||  ||||    
T  2477421 agcgatctgaggtctatagctaaagtggatatttgggtaagaagctcatcaaggtcactttctct-gaga-----gtgatgtttagggatgtgacgttag 2477514  T
Q  481 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaact 570  Q
    ||||||| |  |||||  || ||| | |||||||||||| |||||| ||||| |  ||||| || |||| |||||| ||||||| |||||    
T  2477515 ggaacctttgaaagagaggatgaagggaagggatggtttgatcggaaattgtcacagagaatcgaagactgttggttatggacagaaact 2477604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 2167816 - 2167860
Alignment:
Q  130 taattttgcggagtttgggaagtgccaacaaccgatcatcatcat 174  Q
    ||||||| ||||||||||||||||||||| | |||||||||||||    
T  2167816 taattttccggagtttgggaagtgccaaccatcgatcatcatcat 2167860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 2363210 - 2363162
Alignment:
Q  216 aggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagat 264  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||| ||||    
T  2363210 aggttgagttcgtcgaggaaagggaaacaatcagcaatgaagaagagat 2363162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 2381690 - 2381630
Alignment:
Q  292 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtagg 352  Q
    ||||||| | ||| |||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  2381690 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttagg 2381630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 462 - 562
Target Start/End: Complemental strand, 2391136 - 2391036
Alignment:
Q  462 ttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatgg 561  Q
    ||||||||||||| ||||| |||||  | |||||   |||||||||||||||||||||  | || |||| |||||||||| || |||  |||||||||||    
T  2391136 ttgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatgg 2391037  T
Q  562 a 562  Q
    |    
T  2391036 a 2391036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 2391318 - 2391258
Alignment:
Q  292 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtagg 352  Q
    ||||||| | ||| |||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  2391318 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttagg 2391258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 2477095 - 2477203
Alignment:
Q  64 gaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccg 163  Q
    |||||||||  ||||||||||||||| ||| || | || | ||| | |||||||||   ||||||  ||| ||||||||||||||||| ||||||||  |    
T  2477095 gaagaaggtcgcagttcttgcagagatagtcaatagatcgtcgacccatgaaattaggagataaagcaatcttgcggagtttgggaagcgccaacaattg 2477194  T
Q  164 atcatcatc 172  Q
    |||||||||    
T  2477195 atcatcatc 2477203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 2625634 - 2625602
Alignment:
Q  216 aggttgagttcttcgagtaaagggaaacaatca 248  Q
    |||||||||||||||||||||||||||||||||    
T  2625634 aggttgagttcttcgagtaaagggaaacaatca 2625602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 12126466 - 12126506
Alignment:
Q  117 ttacctgataaattaattttgcggagtttgggaagtgccaa 157  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  12126466 ttaccagataaattaatcttgcggagtttgggaagtgccaa 12126506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 443
Target Start/End: Original strand, 2486145 - 2486204
Alignment:
Q  384 gatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttct 443  Q
    ||||||| ||| | |||||||||||| ||||  |||||||||||| ||||||||||||||    
T  2486145 gatttgaggtccaaagggaaagtggagatatgtgtaagaagctcgccgaggtcactttct 2486204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 591
Target Start/End: Original strand, 5035544 - 5035679
Alignment:
Q  456 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 555  Q
    ||||| ||||| ||||| |||||||||||||| || ||||| |||  || ||||||||| |||   || |||||| |||   |||| || ||||||||||    
T  5035544 gtgatattgagtgatgtaatattagggaacctttcaaagagacgactaaggaaagggattgttgcctcagagattttgaccaagaatcgaagacggttgg 5035643  T
Q  556 tgatggacaaaaactgtttggacacgagggagagag 591  Q
    ||||||| | ||||||||| || |||| ||| ||||    
T  5035644 tgatggagagaaactgttttgaaacgaaggaaagag 5035679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 5106829 - 5106722
Alignment:
Q  67 gaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccgatc 166  Q
    |||||| |||||||||||| |||  ||||| | |||||  | | | |||||||| ||||||   ||| ||||||||||||||||||||||| ||  ||||    
T  5106829 gaaggtcacagttcttgcaaagatggttaatagattggttacccaggaaattacgtgataacgcaatcttgcggagtttgggaagtgccaataattgatc 5106730  T
Q  167 atcatcat 174  Q
    ||||||||    
T  5106729 atcatcat 5106722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 588
Target Start/End: Complemental strand, 1517071 - 1517029
Alignment:
Q  546 agacggttggtgatggacaaaaactgtttggacacgagggaga 588  Q
    |||||||||||||||||||| || |||||||| ||||||||||    
T  1517071 agacggttggtgatggacaagaattgtttggaaacgagggaga 1517029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 2382800 - 2382747
Alignment:
Q  292 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccat 345  Q
    ||||| ||||||| ||||| |||||||| |||||||| ||||||||||| ||||    
T  2382800 aacaaatgaaagaagtcaattttttcatctttttggacaaagctcgcaatccat 2382747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 345
Target Start/End: Original strand, 2482529 - 2482582
Alignment:
Q  292 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccat 345  Q
    ||||||||| |||||||||||||||||| ||||| || | ||||| ||||||||    
T  2482529 aacaagtgagagatgtcaaatttttcatctttttagatagagctctcaacccat 2482582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 2486066 - 2486103
Alignment:
Q  302 agatgtcaaatttttcatgtttttggagaaagctcgca 339  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  2486066 agatgtcaaatttttcatctttttggacaaagctcgca 2486103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 2460283 - 2460335
Alignment:
Q  220 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 272  Q
    |||||||||||||||| || |||||||||||||  ||||| |||| |||||||    
T  2460283 tgagttcttcgagtaatggaaaacaatcagcaattaagaagagatgattcttg 2460335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 2471733 - 2471785
Alignment:
Q  220 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 272  Q
    ||||||||||||||||||| ||||||||||| |  ||||| |||| |||||||    
T  2471733 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttg 2471785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 12126852 - 12126940
Alignment:
Q  506 gaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagaggtt 594  Q
    |||||||||  ||| ||| |||| || |||||||||  | ||||||||||||||||| | ||| |||||||| || | |||||||||||    
T  12126852 gaaagggattttttcatctgagactgcgatggagaataggagacggttggtgatggagagaaattgtttggagacaatggagagaggtt 12126940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 477 - 574
Target Start/End: Complemental strand, 2576512 - 2576415
Alignment:
Q  477 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 574  Q
    ||||||| ||| ||||||||||||  ||||||||||||||||  ||||| ||||||||  ||||| || ||||| ||||||||||| |||||||||||    
T  2576512 ttagggatcctttcgaagaggcgacaaatgaaagggatggttcaatcggtgattgtgaccgagaatcgaagacgattggtgatggataaaaactgttt 2576415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 477 - 577
Target Start/End: Complemental strand, 15838079 - 15837979
Alignment:
Q  477 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 576  Q
    ||||||||||| | |||||||  ||||||||||||||| |||| |||   |||| ||| |||||| || ||||||||||||||||| | |||||||||||    
T  15838079 ttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaaactgtttgg 15837980  T
Q  577 a 577  Q
    |    
T  15837979 a 15837979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 7555124 - 7555160
Alignment:
Q  216 aggttgagttcttcgagtaaagggaaacaatcagcaa 252  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  7555124 aggttgagttcttcgagcaaagggaaacattcagcaa 7555160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 18314771 - 18314718
Alignment:
Q  213 ctaaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatca 266  Q
    ||||||| |||||||||||| ||||||||||||||||||| || ||| ||||||    
T  18314771 ctaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 18314718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 602
Target Start/End: Original strand, 12846948 - 12847004
Alignment:
Q  546 agacggttggtgatggacaaaaactgtttggacacgagggagagaggttccaagtaa 602  Q
    ||||||||||||||||| |  ||||| ||||| |||||||||||| |||||||||||    
T  12846948 agacggttggtgatggagaggaactgcttggaaacgagggagagatgttccaagtaa 12847004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 28673398 - 28673354
Alignment:
Q  221 gagttcttcgagtaaagggaaacaatcagcaaggaagaatagatc 265  Q
    |||||||||||| |||||||| |||||||||| |||||| |||||    
T  28673398 gagttcttcgagcaaagggaagcaatcagcaatgaagaagagatc 28673354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 6423906 - 6423969
Alignment:
Q  291 taacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaa 354  Q
    |||||||||| ||| |||||| || | ||||||| |||||||||||||||||||| ||| ||||    
T  6423906 taacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccatttgtgggaa 6423969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 354
Target Start/End: Complemental strand, 10579152 - 10579090
Alignment:
Q  292 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaa 354  Q
    |||||||||||  ||||||| || | ||||||| |||||||||||| ||||||||||| ||||    
T  10579152 aacaagtgaaacttgtcaaagttgttatgttttgggagaaagctcgtaacccatctgtgggaa 10579090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University