View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13940_high_74 (Length: 221)
Name: NF13940_high_74
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_74 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 1652090 - 1652256
Alignment:
| Q |
1 |
ttgaactttaggtttcatctaattactacctaacactttcttcttaatgtcccagagtggttgtttgagggctgtggctgcatgttactgtattttcctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1652090 |
ttgaactttaggtttcatctaattactacctaacactttcttcttaatgtcccagagtggttgtttgagggctgtggctgcatgttactgtattttcctg |
1652189 |
T |
|
| Q |
101 |
tcttattggaagatcatatgattcgttaaattgattgatattactagatattaggggaggaaattgt |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1652190 |
tcttattggaagatcatatgattcgttaaattgattgatattactagatattaggggaggaaattgt |
1652256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University