View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13940_high_9 (Length: 612)
Name: NF13940_high_9
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 566; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 9999682 - 9999089
Alignment:
| Q |
1 |
tgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatccgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9999682 |
tgagaatcaccaacattcattggtaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatcggcaa |
9999583 |
T |
|
| Q |
101 |
caccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccggtgattaacacaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9999582 |
caccagaaccttcactaccaggaagccaatcatccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccggtgattaacacaac |
9999483 |
T |
|
| Q |
201 |
gacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagaaattgttaagtttaagctgtcaccatttgtttcagcatatggtgtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9999482 |
gacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagagattgttaagtttaagctgtcaccatttgtttcagcatatggtgtc |
9999383 |
T |
|
| Q |
301 |
tctccaactatcacaattgcatatgaaaaatcattggattttacatagtctaatgaaggattctcctcgtagaataccttggtttctttgtcaactgcgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
9999382 |
tctccaactatcacaattgcatatgaaaaatcattggattttacatagtctaatgaaggattctcctcgtagaataccttggtttctttgtcgactgcgt |
9999283 |
T |
|
| Q |
401 |
tttttatagcactcagaattggagtacctgtatattagttaagcaatgttaacattgtatgttatgaatatcagtactgtcaattgtaaatcgcggaaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9999282 |
tttttatagcactcagaattggagtacctgtatattagttaagcaatgttaacattgtatgttatgaatatcagtactgtcaattgtaaatcgcggaaaa |
9999183 |
T |
|
| Q |
501 |
tagctgttttgtataccagtggtgatgtcgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcat |
594 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9999182 |
tagctgttttgtataccagtggtgatgttgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcat |
9999089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 10005830 - 10005380
Alignment:
| Q |
1 |
tgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatccgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10005830 |
tgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatcggcaa |
10005731 |
T |
|
| Q |
101 |
caccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccggtgattaacacaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10005730 |
caccagaaccttcactaccaggaagccaagcaaccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccggtgattaacacaac |
10005631 |
T |
|
| Q |
201 |
gacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagaaattgttaagtttaagctgtcaccatttgtttcagcatatggtgtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10005630 |
gacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagagattgttaagtttaagctgtcaccatttgtttcagcatatggtgtc |
10005531 |
T |
|
| Q |
301 |
tctccaactatcacaattgcatatgaaaaatcattggattttacatagtctaatgaaggattctcctcgtagaataccttggtttctttgtcaactgcgt |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
10005530 |
tctccaactaccacaattgcatatgaaaaatcattgaattttacataatctaatgaaggattctcctcgtagactaccttggtttctttgtcgactgcgt |
10005431 |
T |
|
| Q |
401 |
tttttatagcactcagaattggagtacctgtatattagttaagcaatgtta |
451 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
10005430 |
gttttatagcactcagaattggggtacctgtatatcagttaagcaatgtta |
10005380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 9992727 - 9992295
Alignment:
| Q |
1 |
tgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatccgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
9992727 |
tgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtcctagcaagcttaccagtaaatccataatcaccaaacaaaacatcagcaa |
9992628 |
T |
|
| Q |
101 |
caccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccggtgattaacacaac |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| || ||||| |||||||| | ||||||||||||||| ||| ||||||||| |||| ||||||||| |
|
|
| T |
9992627 |
caccagtaccttcactaccaggaagccaagcagcaacgagtccgtcaattttgttaagatatggttgtatggcaacaggtctaccagtgactaacacaac |
9992528 |
T |
|
| Q |
201 |
gacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagaaattgttaagtttaagctgtcaccatttgtttcagcatatggtgtc |
300 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||| ||||| ||| | || |||||||||||||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
9992527 |
gacacatttcactctgccgcatacattgtttattgtttctgttccgttaccggaaattgttaagttcaagctgtcgccatttgtttcagcgtatggtgtc |
9992428 |
T |
|
| Q |
301 |
tctccaactatcacaattgcatatgaaaaatcattggattttacatagtctaatgaaggattctcctcgtagaataccttggtttctttgtcaactgcgt |
400 |
Q |
| |
|
|||||||||| ||| | |||||| |||||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||||| || |
|
|
| T |
9992427 |
tctccaactaccacgactgcatacgaaaaatcattggattttacgtagtctagtgaaggattctcctcatagactaccttggtttctttgtcaactgtgt |
9992328 |
T |
|
| Q |
401 |
tttttatagcactcagaattggagtacctgtat |
433 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
|
|
| T |
9992327 |
tttttatagcactcagaattgtggtacctgtat |
9992295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 435
Target Start/End: Complemental strand, 10014162 - 10013737
Alignment:
| Q |
10 |
ccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatccgcaacaccagaac |
109 |
Q |
| |
|
||||||||||| || ||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
10014162 |
ccaacattcatcggtaactgatggacagtcttaaaccatgtccttgaaagcttaccagtaaatccataatcaccaaacaaaacatcagcaacaccagtac |
10014063 |
T |
|
| Q |
110 |
cttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccggtgattaacacaacgacacattt |
209 |
Q |
| |
|
|||||||||||||||||||| | || || ||||| ||||| || | |||| ||||||||||||||| |||||| || | |||||| ||||| |||||||| |
|
|
| T |
10014062 |
cttcactaccaggaagccaagccgcaacgagtccgtcaatgttgtgaagaaatggttgtataacaacaggtcttccagagattaagacaacaacacattt |
10013963 |
T |
|
| Q |
210 |
cactccgctgcatacattgtctatcgtttcatatccatgtccagaaattgttaagtttaagctgtcaccatttgtttcagcatatggtgtctctccaact |
309 |
Q |
| |
|
|||| ||| ||||||||| | || ||||| ||||||| ||| || ||| || |||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
10013962 |
cactgcgccgcatacatttttgattgtttctattccatgtgcaggaagtgtcaaatttaagctgtcaccatctgtttcagcatatggtttctctccaact |
10013863 |
T |
|
| Q |
310 |
atcacaattgcatatgaaaaatcattggattttacatagtctaatgaaggattctcctcgtagaataccttggtttctttgtcaactgcgttttttatag |
409 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||||| | ||| | ||| | ||| |||| ||||||||||||||||| |||||| |||| |
|
|
| T |
10013862 |
accacaattgcatatgaaaaaccattggattttacatagtcttgagtaggttgctctttgtattctaccacggtttctttgtcaactgtgtttttaatag |
10013763 |
T |
|
| Q |
410 |
cactcagaattggagtacctgtatat |
435 |
Q |
| |
|
|| ||||||||| ||||||||||||| |
|
|
| T |
10013762 |
cattcagaattgtagtacctgtatat |
10013737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 509 - 594
Target Start/End: Complemental strand, 10004890 - 10004805
Alignment:
| Q |
509 |
ttgtataccagtggtgatgtcgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcat |
594 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10004890 |
ttgtataccagtggtgatgttgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcat |
10004805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 511 - 594
Target Start/End: Complemental strand, 9992037 - 9991954
Alignment:
| Q |
511 |
gtataccagtggtgatgtcgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcat |
594 |
Q |
| |
|
|||||||| | ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9992037 |
gtataccactagtgatgttgttgccactaagtccttgccactgaatggtccatccaccacattgatatcctagattatcagcat |
9991954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 510 - 594
Target Start/End: Complemental strand, 10013427 - 10013343
Alignment:
| Q |
510 |
tgtataccagtggtgatgtcgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcat |
594 |
Q |
| |
|
||||||||||| || |||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
10013427 |
tgtataccagtagtcatgttgtttccactttgtccttgccatgtaatggtccatccaccacattgatttcctatattatcagcat |
10013343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 33353245 - 33353383
Alignment:
| Q |
1 |
tgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatccgcaa |
100 |
Q |
| |
|
|||| ||| |||||||||||||| | ||||||||| | || |||||||| |||||||| || || || || |||||||||||||| |||||||| || | |
|
|
| T |
33353245 |
tgaggatctccaacattcattggaagttgatcaacacttttgaaccatgttcttggaagctttcctgtgaaaccataatcaccaaataaaacatcagcca |
33353344 |
T |
|
| Q |
101 |
caccagaaccttcactaccaggaagccaaccagccacaa |
139 |
Q |
| |
|
|||| ||||||||||| || ||||||||||| |||| |
|
|
| T |
33353345 |
caccttgtccttcactacctggtagccaaccagcaacaa |
33353383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 588
Target Start/End: Original strand, 33354068 - 33354114
Alignment:
| Q |
542 |
tccttgccattgaatggtccatccaccacattgatatcctagattat |
588 |
Q |
| |
|
||||||||||| ||||||||| |||||||| |||||||||||||||| |
|
|
| T |
33354068 |
tccttgccattcaatggtccagccaccacactgatatcctagattat |
33354114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 33347014 - 33347074
Alignment:
| Q |
528 |
tcgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattat |
588 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| ||||| || |||| ||||||||||| |
|
|
| T |
33347014 |
tcgttgccactgactccttgccattcaatggtccagccaccgcactgatgtcctagattat |
33347074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 11244309 - 11244412
Alignment:
| Q |
1 |
tgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatccgcaa |
100 |
Q |
| |
|
|||| ||| |||||||||||||| | ||||| |||| || ||||||||||||| ||||||||| || || ||||| |||||||| | |||||| || | |
|
|
| T |
11244309 |
tgaggatctccaacattcattgggagttgatcgacagatttgaaccatgtccttgcaagtttaccagtgaaaccatagtcaccaaaaagaacatctgcca |
11244408 |
T |
|
| Q |
101 |
cacc |
104 |
Q |
| |
|
|||| |
|
|
| T |
11244409 |
cacc |
11244412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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