View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13940_low_10 (Length: 597)
Name: NF13940_low_10
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Complemental strand, 26567756 - 26567175
Alignment:
| Q |
1 |
caacacattctttttaaccaacaaacatgcttcaggatactatggtagacaaattcaactgtttcatgtaaaatgaagcaatatgtgaaaagaatcaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26567756 |
caacacattctttttaaccaacaaacatgcttcaggatactatggtagacaaattcaactgtttcatgtaaaatgaagcaatatgagaaaagaatcaagt |
26567657 |
T |
|
| Q |
101 |
caattacaagtttatacagattcagtttaagaactaaaatatattactgaacaatacagattgtgacatgatgctaactagctaaagtagctaaaattga |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26567656 |
caattacaagtttatccagattcagtttaagaactaaaatatattactgaacaatacagatagtgacatgatgctaactagctaaagtagctaaaattga |
26567557 |
T |
|
| Q |
201 |
ccaagttacctttggctcaggtttatatcctaaagtctgagtttggagaagcatactccctaaacatgattttacaaaacataatcatgattattttcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26567556 |
ccaagttacctttggctcaggtttatatcctaaagtctgagtttggagaagcatactccctaaacatgattttacaaaacataatcatgattattttcct |
26567457 |
T |
|
| Q |
301 |
ataatcatgttagctcataaaactgcatttgactaaaataaaaaacaattgaatcattatatttttctttcaaaaataaaattgaatcattatatgttga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26567456 |
ataatcatgttagctcataaaactgcatttgactaaaataaaaaacaattgaatcattatatttttctttcaaaaataaaattgaatcattatatgttga |
26567357 |
T |
|
| Q |
401 |
gttgagaaatctacattaaattttaatactctaatgtcaattgaaactcattgttctgccttattatatcaaggtaaaactaatttacaccaacattttt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26567356 |
gttgagaaatctacattaaattttaatactctaatgtcaattgaaactcattgttctgccttattatatcaaggtaaaactaatttacaccaacattttt |
26567257 |
T |
|
| Q |
501 |
gttgctttcttgannnnnnnnnctttctatgtagacaaagtggcaacaccccacacaaaactacgaggtcccgagttagaac |
582 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
26567256 |
gttgctttcttgatttttttttctttctatgtagacaaagtggcaacaccccacacacaactacgaggtcctgagttagaac |
26567175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University