View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_11 (Length: 587)
Name: NF13940_low_11
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Complemental strand, 31097961 - 31097392
Alignment:
| Q |
18 |
attcaaggttaagggagatgccatctcaaacaattgtggacgattgagatggtatggttcgaacaatatggcccattatttggatcgcagagaaaaaagt |
117 |
Q |
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| T |
31097961 |
attcaaggttaagggagatgccatctcaaacaattgtggacgattgagatagtatggttccaacaatatggcccattatttggatcgcagagaaaaaagt |
31097862 |
T |
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| Q |
118 |
aggtgattggtgtttccaagcacagtaattgctacaagatagtttaaaggtaatggaagcattgagaatgcgagacggattggttggggtagaggtagtg |
217 |
Q |
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| T |
31097861 |
aggtgattggtgtttccaagcacagtaattgctacaagatagtttaaaggtaatggaagcattgagaatgcgagacggattggtcggggtagaggtagtg |
31097762 |
T |
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| Q |
218 |
gtggctatagcagcgataatgagaatgttacgttgttaagctttctccagttgatgcctttacaaagtaaatccacatcatggagacagcaaggcaagtg |
317 |
Q |
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| T |
31097761 |
gtggctatagcagcgataatgagaatgttacgttgttaagctttctccagttgatgcctttacaaagtaaatccacatcatggagacagcaaggcaagtg |
31097662 |
T |
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| Q |
318 |
gatcaaggcttgatttgagaactgagaatgtgaggtggctggtctaatagtaatgatatttttatcaagtcagtttttatatcaagatttaattaacaat |
417 |
Q |
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| T |
31097661 |
gatcaaggcttgatttgagaactgagaatgtgaggtggctggtttaatagtaatgatatttttatcaagtcagtttttatatcaagatttaattaacaat |
31097562 |
T |
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| Q |
418 |
cagtttgatatttttaaattgataaagnnnnnnnnacttattctcaatctttatccctttagagttctatatactgatcaaaggtagcaagaattcaacc |
517 |
Q |
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| T |
31097561 |
cagtttgatatttttaaattgataaagttttttttacttattctcaatctttatccctttagagttctatatactgatcaaaggtagcaagaattcaacc |
31097462 |
T |
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| Q |
518 |
gatcaacaattacctacacaagactaatcatgatcagttgattgtgtggaactgatgatgtccatctcat |
587 |
Q |
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| T |
31097461 |
gatcaacaattacctacacaagactaatcatgatcagttgattgtgtggaactaatgaggtccacctcat |
31097392 |
T |
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