View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_12 (Length: 571)
Name: NF13940_low_12
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 16 - 554
Target Start/End: Original strand, 45344160 - 45344698
Alignment:
| Q |
16 |
gaataaaacttggcagcttacaaatttacctgaaggtgctaagaagattggtgtgaaatgggtctttagaaccaaattaaatgagaatggcgaggttgat |
115 |
Q |
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| T |
45344160 |
gaataaaacttggcagcttacaaatttacctgaaggtgctaagaagattggtgtgaaatgggtctttagaaccaaattaaatgagaatggcgaggttgat |
45344259 |
T |
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| Q |
116 |
aagttcaaagcccggttggtagctaaaggctatgctcagcaacaagggttgattatgacgaagtctttgctccggtagcaaggtgggacacaatccggat |
215 |
Q |
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| T |
45344260 |
aagttcaaagcccggttggtagctaaaggctatgctcagcaacaagggttgattataacgaagtctttgctccggtagcaaggtgggacacaatccggat |
45344359 |
T |
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| Q |
216 |
ggttttagctttagcagcacaaaaggggtggagtgtgtaccagctcgatgtcaaaagcgcatttcttcatagtaagttaatagaggacgtgtatgtagaa |
315 |
Q |
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| T |
45344360 |
ggttttagctttagcagcacaaaaggggtggagtgtgtaccaactcgatgtcaaaagcgcatttcttcatagtaagttaatagaggacgtgtatgtagaa |
45344459 |
T |
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| Q |
316 |
catccattagggtatgtccgaaggggtgaaaaagaaaaggtctacaagcttaagaaagctttatatgggttaaagcaagcaccgcgagcttgatatagta |
415 |
Q |
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| T |
45344460 |
catccattagggtatgtccgaaggggtgaaaaagaaaaggtctacaagcttaagaaagctttatatgggttaaagcaagcaccacgagcttgatatagta |
45344559 |
T |
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| Q |
416 |
aaattgaatcatattttgctaaggaatgatttgaaagatgcaatcatgatcatactctctttgtcaaaacaggaggtaaaagaattttaattgtgagttt |
515 |
Q |
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| T |
45344560 |
aaattgaatcatattttgctaaggaatgatttgaaagatgcaatcatgatcatactctctttgtcaaaacaggaggtaaaagaattttaattgtgagttt |
45344659 |
T |
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| Q |
516 |
gtatgttgatgatttaatctttactgggaatgatgcatg |
554 |
Q |
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| T |
45344660 |
gtatgttgatgatttaatctttactgggaatgatgcatg |
45344698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 423
Target Start/End: Complemental strand, 10781979 - 10781926
Alignment:
| Q |
370 |
aaagctttatatgggttaaagcaagcaccgcgagcttgatatagtaaaattgaa |
423 |
Q |
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| T |
10781979 |
aaagctttatatggtttaaagcaagctccaagagcttggtatagtaaaattgaa |
10781926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 503 - 550
Target Start/End: Complemental strand, 1154953 - 1154906
Alignment:
| Q |
503 |
taattgtgagtttgtatgttgatgatttaatctttactgggaatgatg |
550 |
Q |
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| T |
1154953 |
taattgtaagtttgtatgttgatgatttgatatttactggcaatgatg |
1154906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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