View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_14 (Length: 532)
Name: NF13940_low_14
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_14 |
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| [»] chr2 (4 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 89 - 532
Target Start/End: Complemental strand, 14305792 - 14305349
Alignment:
| Q |
89 |
gtgaggatctagtgggagacatcgtgaaactcgcgcaacgcgtggtaatttatagttgtgggggtctgtcttttacaattacatgctctgtctctcatac |
188 |
Q |
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| T |
14305792 |
gtgaggatctagtgggagacatcgtgaaactcgcgcaacgcgtggtaatttatagttgtgggggtctgtcttatacaattacatgctctgtctctcatac |
14305693 |
T |
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| Q |
189 |
tttctgcaacaaactcattacatattttctaacaaataacatgataccttaacaattatcattccataatcttatagccatgtcttcttccacttctgca |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14305692 |
tttctgcaacaaactcattacatattttctaacaaataatatgaaaccttaacaattatcattccataatcttatagccatgtcttcttctacttctgca |
14305593 |
T |
|
| Q |
289 |
tggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcatacttcaatggttaaggttcattttcctatctcctt |
388 |
Q |
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| T |
14305592 |
tggctaacttctccttcatgcacccttttacctttacattcatcttcttctacaccacaattcattcttcaatggttaaggttcattttcctatctcctt |
14305493 |
T |
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| Q |
389 |
gtcctcagagacttcttctttctgctcttgattccttgtttttgctctttctcttagcttttgcagctcaaaaactctattcaagattctattcaagagc |
488 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14305492 |
gtcctcagagacttctactttctgctcttgattccttgtttttgctctccctcttagcttttgcagctcaaaaactctattcaagattctattcaagagc |
14305393 |
T |
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| Q |
489 |
aaacactagctcctcaatcacaaaaccacttctgcaagagaaag |
532 |
Q |
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| T |
14305392 |
aaacactagctcctcaatcacaaaaccacttctgcaagagaaag |
14305349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 267 - 530
Target Start/End: Complemental strand, 14283856 - 14283593
Alignment:
| Q |
267 |
catgtcttcttccacttctgcatggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcatacttcaatggtta |
366 |
Q |
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| T |
14283856 |
catgtcttcttcttcttctgcatggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcatacttcaatggtta |
14283757 |
T |
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| Q |
367 |
aggttcattttcctatctccttgtcctcagagacttcttctttctgctcttgattccttgtttttgctctttctcttagcttttgcagctcaaaaactct |
466 |
Q |
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| T |
14283756 |
aggttcattttcctatctccttgtcctcagagacttcttctttctgctcttgattccttgtttttgctctccctcttagctttttcagctcaaaaactct |
14283657 |
T |
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| Q |
467 |
attcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaagagaa |
530 |
Q |
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| T |
14283656 |
attcaagattctattcaagttccaactctacctccttaatcacaaaaccacttctgcaaaagaa |
14283593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 280 - 524
Target Start/End: Complemental strand, 14321992 - 14321748
Alignment:
| Q |
280 |
acttctgcatggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcatacttcaatggttaaggttcattttcc |
379 |
Q |
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| T |
14321992 |
acttcttcatggctaacttctccttcatgcacccttttacctgtagattcatcttcctctacaccagaactcataattcaatggttaaggttcattttgc |
14321893 |
T |
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| Q |
380 |
tatctccttgtcctcagagacttcttctttctgctcttgattccttgtttttgctctttctcttagcttttgcagctcaaaaactctattcaagattcta |
479 |
Q |
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| T |
14321892 |
tatctccatgtcctcagagacttcttgtttctgctcttgattccttgtttttgctctttctcttagcttttgcagctcaaaaactctattcaagattcta |
14321793 |
T |
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| Q |
480 |
ttcaagagcaaacactagctcctcaatcacaaaaccacttctgca |
524 |
Q |
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| T |
14321792 |
ttcaagagcaaacactagctcctcaatcacaaaaccacttctgca |
14321748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 254 - 472
Target Start/End: Complemental strand, 14271078 - 14270875
Alignment:
| Q |
254 |
ataatcttatagccatgtcttcttccacttctgcatggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcat |
353 |
Q |
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| T |
14271078 |
ataatcttttaaccatgtcttct---acttcatcatggctaacttctccttcatgcacccttttacctatacattcatc-------aaacc-----tcat |
14270994 |
T |
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| Q |
354 |
acttcaatggttaaggttcattttcctatctccttgtcctcagagacttcttctttctgctcttgattccttgtttttgctctttctcttagcttttgca |
453 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
14270993 |
tcttcaatggttaaggttcattttccgatctccatgtcctcagaggcttcttctttcttctcttgattccttgtttttgctctccctcttagcttttgca |
14270894 |
T |
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| Q |
454 |
gctcaaaaactctattcaa |
472 |
Q |
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||||| ||||||||||||| |
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| T |
14270893 |
gctcacaaactctattcaa |
14270875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 266 - 532
Target Start/End: Complemental strand, 25886673 - 25886422
Alignment:
| Q |
266 |
ccatgtcttcttccacttctgcatggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcatacttcaatggtt |
365 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
25886673 |
ccatgtcttcttc---ttcttcatggctaacttctccttcatgcacccttttacctatagattcatcttcctctacaccacaactcatacttcaatggtt |
25886577 |
T |
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| Q |
366 |
aaggttcattttcctatctccttgtcctcagagacttcttctttctgctcttgattccttgtttttgctctttctcttagcttttgcagctcaaaaactc |
465 |
Q |
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|| || ||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |||||| |
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| T |
25886576 |
aacctttcttttcctatctccatgtcctcaaagacttctcctttctgctcttgattccttgtttttgctctccctcttagcttctgcagttcacaaactc |
25886477 |
T |
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| Q |
466 |
tattcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaagagaaag |
532 |
Q |
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| T |
25886476 |
tattc------------aagagcaaacactacctcctcaatcacaaagccacttctgaaagagaaag |
25886422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 281 - 532
Target Start/End: Complemental strand, 44350509 - 44350266
Alignment:
| Q |
281 |
cttctgcatggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcatacttcaatggttaaggttcattttcct |
380 |
Q |
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| T |
44350509 |
cttcttcatggctaacttctccttcatgcacccttttacctacagatccatcttcctctacaccacaactcatacttcaatggttaacctttcttttcct |
44350410 |
T |
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| Q |
381 |
atct-ccttgtcctcagagacttcttctttctgctcttgattccttgtttttgctctttctcttagcttttgcagctcaaaaactctattcaagattcta |
479 |
Q |
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|||| |||||||| |||||||| |||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||| || | |
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| T |
44350409 |
atctgaaatgtcctcaaagacttctcctttctgctcttgattcc---------ctctccctcttagcttttgcagctcacaaactctattcaagaatcaa |
44350319 |
T |
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| Q |
480 |
ttcaagagcaaacactagctcctcaatcacaaaaccacttctgcaagagaaag |
532 |
Q |
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|||| | |||| || ||| ||||||||||||||||||||| ||||||||| |
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| T |
44350318 |
ctcaaattccaacaataactcttcaatcacaaaaccacttctgaaagagaaag |
44350266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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