View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13940_low_17 (Length: 484)

Name: NF13940_low_17
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13940_low_17
NF13940_low_17
[»] chr7 (9 HSPs)
chr7 (1-466)||(33902218-33902693)
chr7 (5-106)||(24211333-24211434)
chr7 (1-136)||(46603696-46603829)
chr7 (5-91)||(9603484-9603570)
chr7 (5-91)||(9831055-9831141)
chr7 (9-91)||(4040862-4040948)
chr7 (35-95)||(45996484-45996544)
chr7 (62-106)||(3399435-3399479)
chr7 (5-77)||(30003801-30003873)
[»] scaffold0192 (1 HSPs)
scaffold0192 (1-136)||(13360-13495)
[»] chr8 (6 HSPs)
chr8 (1-136)||(25267033-25267168)
chr8 (5-108)||(2233875-2233978)
chr8 (44-105)||(17072689-17072750)
chr8 (44-105)||(17575521-17575582)
chr8 (1-106)||(32162764-32162867)
chr8 (1-105)||(39907939-39908043)
[»] chr3 (15 HSPs)
chr3 (5-135)||(41242186-41242316)
chr3 (3-95)||(16053073-16053165)
chr3 (1-95)||(16041133-16041227)
chr3 (1-136)||(11076942-11077076)
chr3 (1-95)||(16037577-16037671)
chr3 (6-106)||(17517888-17517988)
chr3 (9-135)||(37820798-37820924)
chr3 (1-100)||(9821003-9821102)
chr3 (5-95)||(39933347-39933436)
chr3 (5-106)||(28389387-28389494)
chr3 (9-141)||(31229734-31229866)
chr3 (1-102)||(5050596-5050697)
chr3 (69-106)||(34730789-34730826)
chr3 (18-106)||(50744732-50744820)
chr3 (69-106)||(34870135-34870172)
[»] chr6 (5 HSPs)
chr6 (1-106)||(12185710-12185815)
chr6 (1-105)||(9456212-9456316)
chr6 (1-106)||(3441221-3441326)
chr6 (1-106)||(10068183-10068286)
chr6 (14-106)||(25070402-25070494)
[»] chr4 (8 HSPs)
chr4 (1-105)||(3067609-3067713)
chr4 (5-105)||(5050426-5050526)
chr4 (6-94)||(4059118-4059206)
chr4 (32-104)||(31040283-31040356)
chr4 (15-106)||(43967986-43968077)
chr4 (4-100)||(18371146-18371242)
chr4 (32-102)||(36622116-36622186)
chr4 (5-106)||(45891795-45891897)
[»] chr2 (4 HSPs)
chr2 (16-105)||(11152190-11152279)
chr2 (1-101)||(2126187-2126287)
chr2 (41-103)||(22348730-22348792)
chr2 (32-103)||(22345686-22345757)
[»] chr1 (5 HSPs)
chr1 (1-106)||(25808487-25808592)
chr1 (5-134)||(46298512-46298641)
chr1 (23-105)||(19339915-19339997)
chr1 (1-106)||(31501057-31501162)
chr1 (5-106)||(49423341-49423442)
[»] chr5 (4 HSPs)
chr5 (5-104)||(35075847-35075947)
chr5 (10-95)||(31559096-31559181)
chr5 (53-106)||(5150835-5150888)
chr5 (1-106)||(10020725-10020827)
[»] scaffold0402 (1 HSPs)
scaffold0402 (23-105)||(2978-3060)
[»] scaffold1786 (1 HSPs)
scaffold1786 (1-106)||(365-470)


Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 33902218 - 33902693
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||| ||||||||||||    
T  33902218 aatggaattaaattataaattatgtcttgaaaagataagattttaaatttctaaaatattaaatgcataattttcaataaaatatttctatctttaattt 33902317  T
Q  101 cttaacctttgctttcaggacataagttagcatttctcattgtattcttatatggtgtgttgaaataaatccaagtagaatcaactttttgatgttcatt 200  Q
     ||||| ||||| |||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33902318 tttaacttttgccttcagggcataagttagcatttctcattggattcttgtatggtgtgttgaaataaatgcaagtagaatcaactttttgatgttcatt 33902417  T
Q  201 caataccattgttgattaatatccaccatcactttgagatcattgaggtcacgttacaccttttatcaataataacatctttaaataatgctaacgattg 300  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33902418 cgataccattgttgattaatatccaccatcactttgagatcattgaggtcacgttacaccttttatcaataataacatctttaaataatgctaacgattg 33902517  T
Q  301 atatttgactcaaaaccatcgagagaatagaacgtttcctcattagaccctattctcacgctttcttcttcttcctctccaattcccacacagtctcaca 400  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  33902518 atatttgactcaaaaccattgagagaatagaacgtttcctcattagaccctattctcacgctttcttcttcttcctctccaatt-ccacactgtctcaca 33902616  T
Q  401 catttcaattcttcattatccatt-----------ttctttttctctaacttttcaatgtacaccatggtccacatt 466  Q
    ||||||||||||||||||||||||           |||||||||||||||||||||||| |||||||||||||||||    
T  33902617 catttcaattcttcattatccattttctttttcaattctttttctctaacttttcaatgcacaccatggtccacatt 33902693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 24211333 - 24211434
Alignment:
Q  5 gaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctta 104  Q
    ||||||||||||||||||||| |||| ||||| | ||||  |||||||  |||||||||| || ||||||||||||||||||| ||||||| ||||||||    
T  24211333 gaattaaatcataaattatgttttgaaaagattagatttccaatttcttgaatattgaatacacaatttccaacaaaatatttctatctttgatttctta 24211432  T
Q  105 ac 106  Q
    ||    
T  24211433 ac 24211434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 46603829 - 46603696
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    ||||||||||||  |||||||  ||||||| ||||||| ||||||||||||||||| ||  |||||| ||||||||| ||||  ||| |||||||| |||    
T  46603829 aatggaattaaaatataaatt--gtcttgaaaagataagattttaaatttctaaaacatgaaatgcacaatttccaataaaaagtttctatctttagttt 46603732  T
Q  101 cttaacctttgctttcaggacataagttagcatttc 136  Q
    |||||| ||||| || ||| || |||||||||||||    
T  46603731 cttaacttttgccttaagggcacaagttagcatttc 46603696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 9603570 - 9603484
Alignment:
Q  5 gaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttat 91  Q
    |||||||| |||||||  ||| |||| ||||||| ||||||||||||||||| ||  |||||||||||| ||| |||||||||||||    
T  9603570 gaattaaaacataaatattgttttgaaaagataagattttaaatttctaaaacatgaaatgcataattttcaataaaatatttttat 9603484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 9831141 - 9831055
Alignment:
Q  5 gaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttat 91  Q
    |||||||| |||||||  ||| |||| ||||||| ||||||||||||||||| ||  |||||||||||| ||| |||||||||||||    
T  9831141 gaattaaaacataaatattgttttgaaaagataagattttaaatttctaaaacatgaaatgcataattttcaataaaatatttttat 9831055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 4040948 - 4040862
Alignment:
Q  9 taaatcataaattatgtcttgataagataaaattttaaatttctaaaat----attgaatgcataatttccaacaaaatatttttat 91  Q
    ||||||||||||| |||||||| ||||||| |||||||| ||||| |||    |||||||||| ||||||||||||||| |||||||    
T  4040948 taaatcataaattttgtcttgaaaagataatattttaaaattctagaatattgattgaatgcacaatttccaacaaaatgtttttat 4040862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 45996544 - 45996484
Alignment:
Q  35 ataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 95  Q
    |||||||||||||||| || |||||| ||| || ||||| ||| |||||||||||||||||    
T  45996544 ataaaattttaaatttttagaatattaaatacacaatttacaataaaatatttttatcttt 45996484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 3399435 - 3399479
Alignment:
Q  62 aatgcataatttccaacaaaatatttttatctttaatttcttaac 106  Q
    |||||| |||||||||||||| | |||||| ||||||||||||||    
T  3399435 aatgcaaaatttccaacaaaaaacttttatatttaatttcttaac 3399479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 30003873 - 30003801
Alignment:
Q  5 gaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaa 77  Q
    |||||||| |||||||| ||| |||| || ||||  |||||| ||| ||| ||||||||| ||||||||||||    
T  30003873 gaattaaaacataaattttgtattgaaaaaataagtttttaactttttaagatattgaatacataatttccaa 30003801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 13495 - 13360
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    |||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||  |||    
T  13495 aatgcaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatgtttctatctttgcttt 13396  T
Q  101 cttaacctttgctttcaggacataagttagcatttc 136  Q
    |||||| | ||| || || ||| |||||| ||||||    
T  13395 cttaacttgtgccttgagaacacaagttaacatttc 13360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 25267033 - 25267168
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    |||||||||||||||||||||||||||||| | ||||| |||||||||||||| ||||| ||||||| ||||||||||||||| ||| |||||||  |||    
T  25267033 aatggaattaaatcataaattatgtcttgaaatgataagattttaaatttctataatatcgaatgcacaatttccaacaaaatgtttctatctttggttt 25267132  T
Q  101 cttaacctttgctttcaggacataagttagcatttc 136  Q
    |||||| | |||||| ||| || |||||| ||||||    
T  25267133 cttaacttatgctttgagggcagaagttaacatttc 25267168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 2233875 - 2233978
Alignment:
Q  5 gaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctta 104  Q
    ||||||||||||||||| ||| |||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||  ||| |||    
T  2233875 gaattaaatcataaattttgttttgaaaagataaaattttaaatttttagaatattgaatgcataatttccaacaaaatacttttatctttggtttttta 2233974  T
Q  105 acct 108  Q
    ||||    
T  2233975 acct 2233978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 17072750 - 17072689
Alignment:
Q  44 taaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 105  Q
    |||||||||| ||||||||||||| |||   ||||||||||||||||||||| |||||||||    
T  17072750 taaatttctagaatattgaatgcacaatccacaacaaaatatttttatctttgatttcttaa 17072689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 17575521 - 17575582
Alignment:
Q  44 taaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 105  Q
    |||||||||| ||||||||||||| |||   ||||||||||||||||||||| |||||||||    
T  17575521 taaatttctagaatattgaatgcacaatccacaacaaaatatttttatctttgatttcttaa 17575582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 32162867 - 32162764
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    ||||||||||||||||||||| | | |||| || |||| |||||| ||||||||||||||| || || || ||| |||||||| ||||||| ||| ||||    
T  32162867 aatggaattaaatcataaattttattttgaaaatataagattttacatttctaaaatattg-atacacaa-ttcgaacaaaatgtttttatttttgattt 32162770  T
Q  101 cttaac 106  Q
    ||||||    
T  32162769 cttaac 32162764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 39908043 - 39907939
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    |||| ||||||| |||||||| | | || | ||||||| ||||||||||||||||||||  |||||||||| | | | ||||||||| |||||||| |||    
T  39908043 aatgaaattaaaacataaattttattttaaaaagataacattttaaatttctaaaatatgaaatgcataatattctataaaatatttatatctttagttt 39907944  T
Q  101 cttaa 105  Q
     ||||    
T  39907943 tttaa 39907939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 41242186 - 41242316
Alignment:
Q  5 gaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctta 104  Q
    |||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||| |||||| ||||||||||||||| |||||||||||  |||||||    
T  41242186 gaattaaatcataaattatgtcctgaaaagataagatttcaaatttctaaaatattaaatgcacaatttccaacaaaatgtttttatctttggtttctta 41242285  T
Q  105 acctttgctttcaggacataagttagcattt 135  Q
    || | ||| || ||| ||||||||| |||||    
T  41242286 acttgtgccttgagggcataagttaacattt 41242316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 16053165 - 16053073
Alignment:
Q  3 tggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 95  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||    
T  16053165 tggaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatgtttctatcttt 16053073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 16041227 - 16041133
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 95  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||| |||||| ||| |||||||    
T  16041227 aatggaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccatcaaaatgtttctatcttt 16041133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11076942 - 11077076
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    |||||||||||| |||||||| |||||||| || |||| ||||||||||||||||||||||| |||| |||||||||| |||| ||| ||||||| ||||    
T  11076942 aatggaattaaaacataaattttgtcttgaaaatataagattttaaatttctaaaatattgattgcacaatttccaac-aaatgtttctatctttgattt 11077040  T
Q  101 cttaacctttgctttcaggacataagttagcatttc 136  Q
    |||||| | ||| || | |||| |||||||||||||    
T  11077041 cttaacttgtgccttaacgacacaagttagcatttc 11077076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 16037671 - 16037577
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 95  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||| |||||| ||| |||||||    
T  16037671 aatggaattaaatcacaaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccatcaaaatgtttctatcttt 16037577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 17517888 - 17517988
Alignment:
Q  6 aattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 105  Q
    |||||||||||||||||| |||||| ||||||| | ||||||||| || ||||||||||||| |||||| |||||||||||| ||||||| |||||||||    
T  17517888 aattaaatcataaattatatcttgaaaagataagaatttaaatttttagaatattgaatgcacaatttctaacaaaatatttctatctttgatttcttaa 17517987  T
Q  106 c 106  Q
    |    
T  17517988 c 17517988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 37820798 - 37820924
Alignment:
Q  9 taaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaacct 108  Q
    |||| |||||||  |||||| | ||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||| |||| ||| ||||| |    
T  37820798 taaaacataaatattgtcttaaaaagataagattttaaatttctaaaacatggaatgcataatttccaataaaatatttttatatttagtttattaactt 37820897  T
Q  109 ttgctttcaggacataagttagcattt 135  Q
     || ||| ||| ||||||||| |||||    
T  37820898 gtgttttaagggcataagttaacattt 37820924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 9821003 - 9821102
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    ||||||||| ||| ||||||||||| |||| ||||||| |||| ||||||  | ||| ||||||||| |||||| |||||||||||| ||||||||||||    
T  9821003 aatggaattgaattataaattatgttttgaaaagataagatttaaaattttcagaatcttgaatgcacaatttctaacaaaatatttctatctttaattt 9821102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 39933436 - 39933347
Alignment:
Q  5 gaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 95  Q
    ||||||||||||||||| ||| |||| |||||||||||| |||||| || ||||||||||||| ||||| ||||||||  |||||||||||    
T  39933436 gaattaaatcataaattgtgttttgaaaagataaaattt-aaatttttagaatattgaatgcacaattttcaacaaaaattttttatcttt 39933347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 28389494 - 28389387
Alignment:
Q  5 gaattaaatcataaattatgtcttgataagataaaattttaaattt------ctaaaatattgaatgcataatttccaacaaaatatttttatctttaat 98  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||      ||| || ||| |||| | |||||||||||||||||||||||||||  |    
T  28389494 gaattaaatcataaattatatcttgaaaagataatattttaaatttataggactagaacattaaatgtacaatttccaacaaaatatttttatctttggt 28389395  T
Q  99 ttcttaac 106  Q
    ||||||||    
T  28389394 ttcttaac 28389387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 31229734 - 31229866
Alignment:
Q  9 taaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaacct 108  Q
    |||| |||||||||| |||||| |  |||| ||||||||||||||||| || ||||| | ||||||||| ||||| ||| ||| | |||| ||||||| |    
T  31229734 taaaacataaattatatcttgaaatcataagattttaaatttctaaaacatagaatgtacaatttccaataaaatgtttctatatgtaatctcttaactt 31229833  T
Q  109 ttgctttcaggacataagttagcatttctcatt 141  Q
     |||||| ||| || || ||| |||||| ||||    
T  31229834 atgctttaagggcacaaattaacatttcccatt 31229866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5050596 - 5050697
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    ||||||||||||   ||| || ||| |||| |||| |||||||||||||| ||| |||||||||||| |||||  || ||||||||| ||| ||||| ||    
T  5050596 aatggaattaaaatgtaacttttgtattgaaaagacaaaattttaaatttttaatatattgaatgcacaatttttaagaaaatatttctatgtttaactt 5050695  T
Q  101 ct 102  Q
    ||    
T  5050696 ct 5050697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 34730789 - 34730826
Alignment:
Q  69 aatttccaacaaaatatttttatctttaatttcttaac 106  Q
    |||||||||||||||||||||||||||| |||||||||    
T  34730789 aatttccaacaaaatatttttatctttagtttcttaac 34730826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 50744732 - 50744820
Alignment:
Q  18 aattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 106  Q
    |||| ||||| || ||| ||| ||||||||||| ||||||||  |||||| |||||  || ||||||||| |||||||| |||||||||    
T  50744732 aattttgtctagagaagttaagattttaaatttttaaaatatgaaatgcacaatttttaataaaatatttatatctttagtttcttaac 50744820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 34870135 - 34870172
Alignment:
Q  69 aatttccaacaaaatatttttatctttaatttcttaac 106  Q
    |||||||||||||||||||||||||||  |||||||||    
T  34870135 aatttccaacaaaatatttttatctttggtttcttaac 34870172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 12185710 - 12185815
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||| ||||| ||||||||||||| ||| |||| |||    
T  12185710 aatggaattaaatcataaattatgtcttgaaaagataagattttgaatttctagaatattgaatgcacaattttcaacaaaatatttctatttttagttt 12185809  T
Q  101 cttaac 106  Q
    ||||||    
T  12185810 cttaac 12185815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 9456212 - 9456316
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    ||||||||||||| |||||||||||||||| || |||| |||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||| ||||    
T  9456212 aatggaattaaattataaattatgtcttgaaaatataagattttaaatttctagactattgaatgcacaatttccaacaaaatatttctatctttgattt 9456311  T
Q  101 cttaa 105  Q
    |||||    
T  9456312 cttaa 9456316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 3441221 - 3441326
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    |||| ||||||| |||||||| | |||||| || |||| |||||||| |||||||||||  |||||| ||||||| | ||||| ||| ||||||||||||    
T  3441221 aatgaaattaaaacataaattttatcttgaaaatataagattttaaagttctaaaatatgaaatgcacaatttcctataaaatgtttctatctttaattt 3441320  T
Q  101 cttaac 106  Q
     |||||    
T  3441321 tttaac 3441326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 10068286 - 10068183
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    |||| ||||||| |||||||| |||||||| |  |||||||||||||||||||||| ||  |||||| ||  ||||| ||||||||| ||| |||| |||    
T  10068286 aatgaaattaaaacataaattttgtcttgacagaataaaattttaaatttctaaaacatgaaatgcacaa--tccaataaaatatttctatatttagttt 10068189  T
Q  101 cttaac 106  Q
    ||||||    
T  10068188 cttaac 10068183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 25070402 - 25070494
Alignment:
Q  14 cataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 106  Q
    |||||||| |||||| | ||||||| ||||||||||||||||||||  ||| || |||||  || ||||| ||| |||||||| ||| |||||    
T  25070402 cataaattttgtcttcaaaagataagattttaaatttctaaaatatgaaatacacaatttttaataaaatgtttatatctttagttttttaac 25070494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 3067609 - 3067713
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    |||| |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||  |||    
T  3067609 aatgaaattaaatcataaattatttcttgaaaagataagattttaaatttctaaaatattgaatgcacaatttccaacaaaatgtttctatctttggttt 3067708  T
Q  101 cttaa 105  Q
    |||||    
T  3067709 cttaa 3067713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 5050526 - 5050426
Alignment:
Q  5 gaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctta 104  Q
    |||||||||||||||||||| ||  | ||||||| ||||||||||||||||||||| |||||| ||||| ||| ||||| |||||||||||  |||||||    
T  5050526 gaattaaatcataaattatgcctcaagaagataagattttaaatttctaaaatattaaatgcacaattttcaataaaatgtttttatctttggtttctta 5050427  T
Q  105 a 105  Q
    |    
T  5050426 a 5050426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 4059118 - 4059206
Alignment:
Q  6 aattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctt 94  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||  ||| || |||||| || ||||| ||||||||||    
T  4059118 aattaaaacataaattttgtcttgaaaagataaaattttaaatttctaaaatataaaatacacaatttctaataaaatgtttttatctt 4059206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 31040356 - 31040283
Alignment:
Q  32 aagataaaattttaaatttctaaaatattga-atgcataatttccaacaaaatatttttatctttaatttctta 104  Q
    ||||||| ||||||||||||||||| ||| | ||||||||||||||| ||||||||||||| ||||||||||||    
T  31040356 aagataagattttaaatttctaaaacattaatatgcataatttccaataaaatatttttatatttaatttctta 31040283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 43967986 - 43968077
Alignment:
Q  15 ataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 106  Q
    |||||||||||||||| ||||||| |||| |||||| || |||||| |||||| ||||| ||||||||| ||| |||||||  |||||||||    
T  43967986 ataaattatgtcttgaaaagataagatttaaaatttttagaatattaaatgcacaattttcaacaaaatgtttctatctttggtttcttaac 43968077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 18371242 - 18371146
Alignment:
Q  4 ggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    |||||||||  ||||||| | |||| | || |||| |||||||| ||||||||||| ||||||| ||||||| | ||||||||| ||||||||||||    
T  18371242 ggaattaaaatataaattttatcttaaaaatataagattttaaagttctaaaatatagaatgcacaatttcctataaaatatttctatctttaattt 18371146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 36622116 - 36622186
Alignment:
Q  32 aagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttct 102  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||| ||||| ||| ||| |||| |||||    
T  36622116 aagataaaattttaaatttttaatatattgaatgcacaatttccaaaaaaatgtttatatgtttactttct 36622186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 45891897 - 45891795
Alignment:
Q  5 gaattaaatcataaattatgtctt-gataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctt 103  Q
    |||||||||||||| || |||||| || || |||| ||||||||||| ||  | |||||||||| ||| ||||||||||| ||| || ||||  ||||||    
T  45891897 gaattaaatcataatttttgtctttgaaaaaataagattttaaatttttaggacattgaatgcacaatctccaacaaaatgtttctaactttggtttctt 45891798  T
Q  104 aac 106  Q
    |||    
T  45891797 aac 45891795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 11152279 - 11152190
Alignment:
Q  16 taaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 105  Q
    ||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| |||||||||    
T  11152279 taaattatgtcttgagaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatattttcatctttgatttcttaa 11152190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 2126187 - 2126287
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    |||||||||||||||||||| ||||||||| || ||||  |||||||||| |||||||||||||||| ||||||||||||||||||| |||||||| |||    
T  2126187 aatggaattaaatcataaatcatgtcttgaaaatataagtttttaaatttttaaaatattgaatgcacaatttccaacaaaatatttctatctttagttt 2126286  T
Q  101 c 101  Q
    |    
T  2126287 c 2126287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 22348730 - 22348792
Alignment:
Q  41 ttttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctt 103  Q
    ||||||| || |||||||||||||||| ||||| ||| ||||||||||||| |||| ||||||    
T  22348730 ttttaaacttttaaaatattgaatgcacaattttcaagaaaatatttttatatttagtttctt 22348792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 22345686 - 22345757
Alignment:
Q  32 aagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctt 103  Q
    |||||||| |||||||| | |||||||||||||||| |||||| || |||||| ||  || |||||||||||    
T  22345686 aagataaatttttaaatgtttaaaatattgaatgcacaatttcaaagaaaatacttaaatatttaatttctt 22345757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 25808487 - 25808592
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    ||||||||||||||||||||  |||||| | ||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||  |||    
T  25808487 aatggaattaaatcataaatgttgtcttcaaaagataaaattttaaatttttaaaatattgaatacacaatttctaacaaaatatttttatctttggttt 25808586  T
Q  101 cttaac 106  Q
    ||||||    
T  25808587 cttaac 25808592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 46298641 - 46298512
Alignment:
Q  5 gaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctta 104  Q
    |||||||| |||||||  |||||||| ||||||| |||||||||||||| ||||||||||  | ||||||||||||||| |||||||||||  |||||||    
T  46298641 gaattaaaacataaatgttgtcttgaaaagataagattttaaatttctataatattgaatatacaatttccaacaaaatgtttttatctttggtttctta 46298542  T
Q  105 acctttgctttcaggacataagttagcatt 134  Q
    || | ||  || ||||||||||||||||||    
T  46298541 acttgtgtcttaaggacataagttagcatt 46298512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 19339997 - 19339915
Alignment:
Q  23 tgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 105  Q
    |||||||| ||||||| | |||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||  ||||||||    
T  19339997 tgtcttgaaaagataagactttaaagttctaaaatattgaatgcacaatttccaacaaaatgtttatatctttggtttcttaa 19339915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 31501057 - 31501162
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    |||| ||||||||||||| || ||| |||| ||||||| |||||||||||||| || ||| |||||| |||||||||||| || ||| ||||||| ||||    
T  31501057 aatgaaattaaatcataatttttgttttgaaaagataagattttaaatttctagaacattaaatgcacaatttccaacaatatgtttctatctttgattt 31501156  T
Q  101 cttaac 106  Q
     |||||    
T  31501157 tttaac 31501162  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 49423442 - 49423341
Alignment:
Q  5 gaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctta 104  Q
    |||||||| |||||||  | |||| | ||||||| ||||||||||| ||||| ||  |||||| ||||| ||| ||||||||||||| |||||||| |||    
T  49423442 gaattaaaacataaatattatcttaaaaagataagattttaaatttttaaaacatgaaatgcacaattttcaataaaatatttttatgtttaatttatta 49423343  T
Q  105 ac 106  Q
    ||    
T  49423342 ac 49423341  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 35075947 - 35075847
Alignment:
Q  5 gaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaac-aaaatatttttatctttaatttctt 103  Q
    |||||||||||||| || |||||||| ||||||| |||||||||||||| ||||||||||||| ||||| |||| ||||| ||| |||||||| ||||||    
T  35075947 gaattaaatcataatttttgtcttgaaaagataagattttaaatttctagaatattgaatgcacaattttcaacaaaaatgtttatatctttagtttctt 35075848  T
Q  104 a 104  Q
    |    
T  35075847 a 35075847  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 31559096 - 31559181
Alignment:
Q  10 aaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 95  Q
    |||| |||||||||||||||| || ||||||||||||||| |||||||| | |||||| ||| ||||||||||| ||| |||||||    
T  31559096 aaataataaattatgtcttgaaaacataaaattttaaattgctaaaatactaaatgcacaatgtccaacaaaatgtttctatcttt 31559181  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 5150888 - 5150835
Alignment:
Q  53 aaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 106  Q
    ||||||||||||||||||||| ||| |||||||||| |||||||  ||||||||    
T  5150888 aaaatattgaatgcataattttcaagaaaatattttaatctttagcttcttaac 5150835  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 10020827 - 10020725
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    |||||||||||| || ||||  |||||||| || ||||| |||||||||||||||| || ||||| |  |||||   |||||||||| ||| ||||||||    
T  10020827 aatggaattaaaacaaaaatattgtcttgaaaatataaatttttaaatttctaaaacatagaatgaacgatttc---caaaatatttctatatttaattt 10020731  T
Q  101 cttaac 106  Q
     |||||    
T  10020730 attaac 10020725  T

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Target: scaffold0402 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 3060 - 2978
Alignment:
Q  23 tgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 105  Q
    |||||||| ||||||| | |||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||  ||||||||    
T  3060 tgtcttgaaaagataagactttaaagttctaaaatattgaatgcacaatttccaacaaaatgtttatatctttggtttcttaa 2978  T

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Target: scaffold1786 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 470 - 365
Alignment:
Q  1 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 100  Q
    |||| |||||||  ||||||| | |||| | || |||| |||||||| || ||||||||| |||||| |||||  ||||||||||||  || |||||| |    
T  470 aatgaaattaaaaaataaattttatcttaaaaatataagattttaaaattttaaaatattaaatgcacaattttgaacaaaatatttcaatttttaatat 371  T
Q  101 cttaac 106  Q
    ||||||    
T  370 cttaac 365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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