View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_19 (Length: 476)
Name: NF13940_low_19
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Original strand, 13795045 - 13795499
Alignment:
| Q |
16 |
aactgtgcctacaacttggattgttatgggccctggagtcaaacatgggcctgaaaagaacattgaagaaacaaggaatcttcctgaagggattagaagc |
115 |
Q |
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| T |
13795045 |
aactgtgcctacaacttggattgttatgggccctggagtcaaacatgggcctgaaaagaacattgaagaaacaaggaatcttcctgaagggattagaagc |
13795144 |
T |
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| Q |
116 |
ctggcttgcactttggacttgcaggctgcttgccatccatccatgaaagcctgcaggtaaatgtataacaaataaggacgatattaacgctgacacaaat |
215 |
Q |
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| T |
13795145 |
ctggcttgcactttggacttgcaggctgcttgccatccatccatgaaagcctgcaggtaaatgtataacaaataaggacgatattaacgctgacacaaat |
13795244 |
T |
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| Q |
216 |
tcgaatactgaggacgacattaatgctgacatgtaaacaacattaataattaagaaaatggttgaatgtaattacatttgtcactatagatatggacgtg |
315 |
Q |
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| T |
13795245 |
tcgaatactgaggacgacattaatgctgacatgtaaacaacattaataattaagaaaatggttgaatgtaattacatttgtcactatagatatggacgtg |
13795344 |
T |
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| Q |
316 |
tatcggacaccaaacatgtattcgatttgaagtgaaggtgtaacatagactttacctattatacattgtgaggtcatgcaaaaattgcttggttgatttt |
415 |
Q |
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| T |
13795345 |
tatcggacaccaaacatgtattcgatttgaagtgaaggtgtaacatagagtttacctattatacattgtgaggtcatgcaaaaattgcttggttgatttt |
13795444 |
T |
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| Q |
416 |
attttatcctatgaattctgttttggttggtcattttgaatttgattcacagtcc |
470 |
Q |
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| T |
13795445 |
attttatcctatgaattctgttttggttggtcattttgaatttgattcactgtcc |
13795499 |
T |
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