View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_20 (Length: 474)
Name: NF13940_low_20
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 30621792 - 30621441
Alignment:
| Q |
1 |
ctaattaatctcagccacgtatgctagagtacaacacgtacaaataagagaataattcctttttcgaaagttagagtcggtgttgagacttgatgccaga |
100 |
Q |
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| T |
30621792 |
ctaattaatctcagccacgtatgctagagtacaacacgtacaaataagagaataattcctttttcgaaagttagagtcggtgttgagatttgatgccaga |
30621693 |
T |
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| Q |
101 |
ccagtnnnnnnnnnnnggagaataagtagggaggcagaagcatattcttctcgaatatttgcacttgcagtaactgtaattttcctttgccaataaaatt |
200 |
Q |
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| T |
30621692 |
ccagtaaaaaaaaataggagaataattagggaggcagaagcatattcttctcgaatatttgcactttcagtaactgtaattttcctttgccaatgaaatt |
30621593 |
T |
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| Q |
201 |
tcttcttttgcctatatatcattttccactgcctttaannnnnnnnncactaaagccaaatcctttgattcatctttttctttctctctcttgtagttcc |
300 |
Q |
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| T |
30621592 |
ttttctttttcctatatatcattttccactgcctttcatttttttttcactaaagccaatttcttttattcatctttttctttctctctcttgtagttcc |
30621493 |
T |
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| Q |
301 |
aacgacttctgtgttaattatctttcaggtaacaatcttgcattctcactttctac |
356 |
Q |
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| T |
30621492 |
a---acttctgtgttaattatc-ttcaggtaacaatcttgcattctcactatctac |
30621441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 405 - 474
Target Start/End: Complemental strand, 30621405 - 30621335
Alignment:
| Q |
405 |
catcatgtgaccattacgtccctccaaatgcattatatatatatgttgt---attctccatctcaacatcaac |
474 |
Q |
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| T |
30621405 |
catcatgtgaccattacgtccctccaaatgcattatat--atatgttgtataattctccatctcaacatcaac |
30621335 |
T |
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