View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13940_low_23 (Length: 448)
Name: NF13940_low_23
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 36559830 - 36560122
Alignment:
| Q |
1 |
tttgaacagaaattaactatgccactgtgtattcaggtacttctattgtgttgtttcctagcacaagcctgataggtataagcctcgatcactttatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36559830 |
tttgaacagaaattaactatgccactgtgtattcaggtacttttattgtgttgtttcctagcacaagcctgataggtataagcctcgatcactttatgta |
36559929 |
T |
|
| Q |
101 |
tatgaacagtggattcaattaaacctagagagggagaaaaatgatgtcacaatattgtaccaatagtaacactcaatcatcataatcataataatatact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36559930 |
tatgaacagtggattcaattaaacctagagagggagaaaaatgatgtcacaatattgtaccaatagtaacactcaatcatcataatcataataatatact |
36560029 |
T |
|
| Q |
201 |
ttcaattaattgccacctctcttcctagc-taatattaagtgtcaccaactgtcttaatttactagacccaccaaattgtaccttttccactc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36560030 |
ttcaattaattgccacctctcttcctagcttaatattaagtgtcaccaactgtcttaatttactagacccaccaaattgtaccttttccactc |
36560122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 36560187 - 36560265
Alignment:
| Q |
357 |
acactccgtgtaatctatcttatattttttaaatctcatatattttctttaatattaagttaatttcttacacaaagct |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36560187 |
acactccgtgtaatctatcttatattttttaaatctcatatattttctttaatattaagttaatttcttacacaaagct |
36560265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University