View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_26 (Length: 443)
Name: NF13940_low_26
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 42667330 - 42666910
Alignment:
| Q |
1 |
acattataaattctgaacctccaatgaagaagaagcatagacataataaaagcgttgaaaattttcagagcattctgaattctgaacctgctactactgt |
100 |
Q |
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| T |
42667330 |
acattataaattctgaacctccaatgaagaagcagcatagacataa---aagcgttgaaaattttcagagcattctgaattctgaacctgctactactgt |
42667234 |
T |
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| Q |
101 |
gccttcttattcttctccttttcctgatttgttctattctaagaaaaacaaacagaagaaacttaactctgtttcgccgtcacaacatcatgtttcagct |
200 |
Q |
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| T |
42667233 |
gccttcttattcttctccttttcctgatttgttctattctaagaaaaacaaacagaagaaacttaactctgtttcgccgtcacaaaatcatgtttcagct |
42667134 |
T |
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| Q |
201 |
atgattatgtcaaaaacaaaggatgaggatttttctgtgattactggtaatgagtcgccattgaactcaatacctccaccgcctcctcctccacctccgt |
300 |
Q |
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| T |
42667133 |
atgattatgtcaaaaacaaaggatgaggatttttctgtgattactggtaatgagtcgccattgaactcaatacctccaccgcctcctcctccacctccgt |
42667034 |
T |
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| Q |
301 |
tcaagatgccagcatggaagttcaaggtgcagggtgactttgttagaatagatagcattagtagttcaagttcggtagatatagatgaggaagtagtgga |
400 |
Q |
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| T |
42667033 |
tcaagatgccagcatggaagttcaaggtgcagggtgactttgttagaatagatagcattagtagttcaagttcggtagatatagatgaggaagtagtgga |
42666934 |
T |
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| Q |
401 |
gttaccaaccattagtggtgaaga |
424 |
Q |
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| T |
42666933 |
gttaccaaccattagtggcgaaga |
42666910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 42667399 - 42667311
Alignment:
| Q |
1 |
acattataaattctgaacctccaatgaagaagaagcatagacataataaaagcgttgaaaattttcagagcattctgaattctgaacct |
89 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |
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| T |
42667399 |
acattataaattctgaacctccaatgaagaagaagcatagacataataaaagcgttgaaaattttcagaacattataaattctgaacct |
42667311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 42667439 - 42667380
Alignment:
| Q |
27 |
aagaagaagcatagacataataaaagcgttgaaaattttcagagcattctgaattctgaacct |
89 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||| |
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| T |
42667439 |
aagaagaagcatagacataa---aagcgttgaaaattttcagaacattataaattctgaacct |
42667380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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