View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_28 (Length: 421)
Name: NF13940_low_28
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 5 - 406
Target Start/End: Complemental strand, 5337625 - 5337224
Alignment:
| Q |
5 |
tgtcgaagaatatcttcgtgtacttgcatatgagtatgctactatgggctctcttcatgacattttgcacggtatgtagcatcatatccattcttaaatt |
104 |
Q |
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| T |
5337625 |
tgtcgaagaaaatcttcgtgtacttgcatatgagtatgctattatgggctctcttcatgacattttgcacggtatgtagcatcatatccattcttaaatt |
5337526 |
T |
|
| Q |
105 |
atacttcatataagaagttccgttgatgattttgatgtctttccattacaggtaaaaatggagttcaaggggcgcaaccatggccaactcttaattggat |
204 |
Q |
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| T |
5337525 |
atacttcatataagaagttccgttgatgattttgatgtctttccattacaggtaaaaatggagttcaaggggcgcaaccatggccaactcttaattggat |
5337426 |
T |
|
| Q |
205 |
gcagcgagcaagaattgcagtcgatacagcaaggggattggaatatttacatgagaaagttcaaccatcaatcatacacaaggatatcaggtcaagtaat |
304 |
Q |
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| T |
5337425 |
gcagcgagcaagaattgcagtcgatacagcaaggggattggaatatttacatgagaaagttcaaccatcaatcatacacaaggatatcaggtcaagtaat |
5337326 |
T |
|
| Q |
305 |
gtgcttatctttgaagattacaaagctaaggtagctgattttaacctctctaatacaaaggggccctttaggtaagcttacataattttatagctttgta |
404 |
Q |
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| T |
5337325 |
gtgcttatctttgaagattacaaagctaaggtagctgattttaacctctctaatacaaaggggccctttaggtaagcttacataattttatagctttgta |
5337226 |
T |
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| Q |
405 |
tt |
406 |
Q |
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| T |
5337225 |
tt |
5337224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 52717414 - 52717756
Alignment:
| Q |
16 |
atcttcgtgtacttgcatatgagtatgctactatgggctctcttcatgacattttgcacggtatgtagcatcatatccattcttaaattatacttcatat |
115 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | ||| | || |||| |
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| T |
52717414 |
atctccgtgtacttgcatatgagtttgctactatgggctctcttcatgacattttgcacggtatgtagcttcatatcctttctttacttaaattttatat |
52717513 |
T |
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| Q |
116 |
aagaagttccgttgatgattttgatgtctttccattacaggtaaaaatggagttcaaggggcgcaaccatggccaactcttaattggatgcagcgagcaa |
215 |
Q |
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| T |
52717514 |
aagaagttccattgatgattttggcgactttccattacaggtagaaagggagttcaaggggcacaaccagggccaactcttaactggatgcagcgagtta |
52717613 |
T |
|
| Q |
216 |
gaattgcagtcgatacagcaaggggattggaatatttacatgagaaagttcaaccatcaatcatacacaaggatatcaggtcaagtaatgtgcttatctt |
315 |
Q |
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| T |
52717614 |
gaattgcagttgatgcagcaaggggattagaatatttacatgagaaagttcaaccatcaatcatacacagggatatcaggtcaagcaatgtgcttatctt |
52717713 |
T |
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| Q |
316 |
tgaagattacaaagctaaggtagctgattttaacctctctaat |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52717714 |
tgaagattacaaagctaaggtagctgattttaacctctctaat |
52717756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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