View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_29 (Length: 418)
Name: NF13940_low_29
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Complemental strand, 43213058 - 43212658
Alignment:
| Q |
16 |
aaaatcaatgcatccacaaaagtattccacataaaggaagcaggatgttctctagaagcaagaattaagcacatttattgacctcacagctactcagctg |
115 |
Q |
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| T |
43213058 |
aaaatcaatgcatccacaaaagtattccacataaaggaagcaggatgttctctagaagcaagaattaagcacatttattgacctcacagctactcagctg |
43212959 |
T |
|
| Q |
116 |
aactaagggattccagtctactagactgagaagataaggagcatcatctggtctagaatagtttgaaggggggatgatggagatatggccctttggacaa |
215 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43212958 |
aactaagggattccagtctaccagactgagaagataaggagcatcatctggtctagaatagtttgaaggggggatgatggaggtatggccctttggacaa |
43212859 |
T |
|
| Q |
216 |
tttgatcttccaaacttatgacagattatactgaaattaaataccgtcaatcaatttagtgtctacattaatcaattcaatgaatgggaagtgaaagtcg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43212858 |
tttgatcttccaaacttatgacagattatactgaaattaaataccgtcaatcaatttagtgtctacattaatcaattcaatgaatgggaagtgaaggtcg |
43212759 |
T |
|
| Q |
316 |
ctcattcataccaagaggtaaatcaatgctttgatgcgcttgcaaatttaggatgctctttgaataaccctgtgatgttttatggatgatgtccatctca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| |||| |
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| T |
43212758 |
ctcattcataccaagaggtaaatcaatgctttgatgcgcttgcaaatttaggatgctctttgaataaccctgtgatgttctatggatcatatccaactca |
43212659 |
T |
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| Q |
416 |
t |
416 |
Q |
| |
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| T |
43212658 |
t |
43212658 |
T |
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