View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_30 (Length: 409)
Name: NF13940_low_30
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 6917102 - 6916725
Alignment:
| Q |
17 |
gaacattgctgcgtctgtcactgtgtgactgtttctaaaccttagctttgtgaaggtgataattcagaatgaatcaatgaactccaaattgttgaaagga |
116 |
Q |
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| T |
6917102 |
gaacattgctgcgtctgtcactgtgtgactgtttctagaccttagctttgtgaaggtgataattcagaatgaatcaatgaactccaaattgttgaaagga |
6917003 |
T |
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| Q |
117 |
cttggatatggccgcccttttggccagaccggaacaatatacaagaagcctgccatgattatcacctcatcacagatttacagtcggaagtgcattgata |
216 |
Q |
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| T |
6917002 |
cttggatatggtcgcccttttggccagaccggaacaatatacaagaagcctgccatgattatcacctcatcaca--tttacagtcagaagtgcattgata |
6916905 |
T |
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| Q |
217 |
agtgaacaaaaatctaaactagctgaacaatgtatgatagaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatatatgataaa |
316 |
Q |
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| T |
6916904 |
agtgaacaaaaatctaaactagctgaacaatgtatgatagaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatatatgataaa |
6916805 |
T |
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| Q |
317 |
tttaatattaaatcaagtttcccaataaaaacattggagtgacaccaaattgtacactatcacaattatagctacttttt |
396 |
Q |
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| T |
6916804 |
tttaatgttaaatcaagtttcccaataaaaacattggagtgacaccaaattgtacactatcacaattatagctacttttt |
6916725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 6890724 - 6890644
Alignment:
| Q |
155 |
atacaagaagcctgccatgattatcacctcatcacagatttacagtcggaagtgcattgataagtgaacaaaaatctaaactagctgaa |
243 |
Q |
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| T |
6890724 |
atacaagaagcctgccatgaatatcacctcat--------tacagtcagaagtacattgacaagtgaaccaaaatctaaactagctgaa |
6890644 |
T |
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