View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_33 (Length: 375)
Name: NF13940_low_33
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 41079442 - 41079797
Alignment:
| Q |
7 |
gtttcgtatgttgttcattctattctatcaatactatgaattgggaacacgagagaaaatgatgattgatacatttcatgtaatcacttggttgcaa-ca |
105 |
Q |
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| T |
41079442 |
gtttcgtatgttgttcattctattctataaatactatgaattgggaacacgagagaaaatgatgattgatacatttcatgtaatcacttggttgcaaaca |
41079541 |
T |
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| Q |
106 |
agtgttgagaatattatgcctagatatcgttttttaggtttaggtttagatataaaataagatagcattatagatagaattaattatgaagtgatggtgt |
205 |
Q |
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| T |
41079542 |
agtgttgagaatattatgcctagatatcgttttttaggtttaggtttagatataaaataagatagcattatagatagaattaattatgaagtgatggtgt |
41079641 |
T |
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| Q |
206 |
aaattttttgcatccaataaaatcatttttaggaactaacccaaaaaggtggcatcataaagtgatttgtttagatgtatgtgtaaaaacgtttcacatg |
305 |
Q |
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| T |
41079642 |
aaattttgtgcatccaataaaatcatttttaggaactaacccaaattggtggcatcataaagtgatttgtttagatgtatgtgtaaaaacgtttcacatg |
41079741 |
T |
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| Q |
306 |
gtcggtgtatataaattaaatctttaaaggtatcattaaaatttaaatttgaatat |
361 |
Q |
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| T |
41079742 |
gtcggtgtatataaattaaatccttaaaggtatcattaagatttaaatttgaatat |
41079797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 361
Target Start/End: Original strand, 41101307 - 41101411
Alignment:
| Q |
257 |
gcatcataaagtgatttgtttagatgtatgtgtaaaaacgtttcacatggtcggtgtatataaattaaatctttaaaggtatcattaaaatttaaatttg |
356 |
Q |
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| T |
41101307 |
gcatcatactgtcatttgattagatgcttgtgtaaaaatgtttcacaccgtcaatgtatatgaattaaatccctaaagatatcattaagatttaaatttg |
41101406 |
T |
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| Q |
357 |
aatat |
361 |
Q |
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||||| |
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| T |
41101407 |
aatat |
41101411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 15596460 - 15596399
Alignment:
| Q |
232 |
ttttaggaactaacccaaaaaggtggcatcataaagtgatttgtttagatgtatgtgtaaaa |
293 |
Q |
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||||||||||||||| |||||| ||||||||||||||||| || || |||| |||||||||| |
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| T |
15596460 |
ttttaggaactaacctaaaaagctggcatcataaagtgatgtgattggatgcatgtgtaaaa |
15596399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 41090959 - 41090991
Alignment:
| Q |
212 |
tttgcatccaataaaatcatttttaggaactaa |
244 |
Q |
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| T |
41090959 |
tttgcatccaataaaatcatttttaggaactaa |
41090991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 41101200 - 41101272
Alignment:
| Q |
111 |
tgagaatattatgcctagatatcgttttttaggtttaggtttagatataaaataagatagcattatagataga |
183 |
Q |
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| T |
41101200 |
tgagaatattaagcctaaatatcgtttttaagatttaggtttagatttatagtaaaatatcgttatagataga |
41101272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 41101136 - 41101171
Alignment:
| Q |
61 |
gaaaatgatgattgatacatttcatgtaatcacttg |
96 |
Q |
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| T |
41101136 |
gaaaatgatgattgatccatttcatgtaatcacttg |
41101171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 33914028 - 33914122
Alignment:
| Q |
233 |
tttaggaactaacccaaaaaggtggcatcataaagtgatttgtttagatgtatgtgtaaaaacgtttcacatggtcggtgtatataaattaaatc |
327 |
Q |
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| T |
33914028 |
tttaggaactaacctaaaaatgtgacatcatgaagtgatttgattggatgcatgtgcaaaaatatttcacgatgtccgtgtatagaaattaaatc |
33914122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 3660468 - 3660374
Alignment:
| Q |
232 |
ttttaggaactaacccaaaaaggtggcatcataaagtgatttgtttagatgtatgtgtaaaaacgtttcacatggtcggtgtatataaattaaatc |
327 |
Q |
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| T |
3660468 |
ttttaggaactaacctaaaaag-tggcatcattgagtgatttgattgaatgcatgtgtatagaagttttacattgtcagtgtatataaattgaatc |
3660374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 27048838 - 27048894
Alignment:
| Q |
239 |
aactaacccaaaaaggtggcatcataaagtgatttgtttagatgtatgtgtaaaaac |
295 |
Q |
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| T |
27048838 |
aactaacctaaaaaggtggcatcataaagtaatttgattggattcgtgtgtaaaaac |
27048894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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