View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13940_low_34 (Length: 374)

Name: NF13940_low_34
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13940_low_34
NF13940_low_34
[»] chr2 (7 HSPs)
chr2 (21-65)||(40172439-40172483)
chr2 (1-65)||(38581582-38581646)
chr2 (11-65)||(39334857-39334911)
chr2 (11-52)||(279788-279828)
chr2 (17-64)||(4936497-4936545)
chr2 (17-64)||(5021586-5021634)
chr2 (11-55)||(5807753-5807797)
[»] chr1 (13 HSPs)
chr1 (1-65)||(9410304-9410368)
chr1 (17-65)||(34870258-34870305)
chr1 (17-55)||(23750221-23750259)
chr1 (17-62)||(8904325-8904370)
chr1 (17-65)||(13941390-13941438)
chr1 (17-65)||(16182880-16182928)
chr1 (22-65)||(7015662-7015705)
chr1 (17-60)||(42908842-42908885)
chr1 (17-54)||(195115-195152)
chr1 (17-54)||(9769567-9769604)
chr1 (17-65)||(2903003-2903051)
chr1 (17-65)||(33844688-33844736)
chr1 (17-65)||(33949242-33949290)
[»] chr5 (9 HSPs)
chr5 (1-54)||(29561703-29561756)
chr5 (11-62)||(39684303-39684354)
chr5 (17-65)||(20186935-20186983)
chr5 (11-62)||(11246473-11246524)
chr5 (17-56)||(22687866-22687905)
chr5 (15-65)||(18535983-18536033)
chr5 (11-56)||(28768662-28768707)
chr5 (11-64)||(37986844-37986897)
chr5 (11-44)||(38040330-38040363)
[»] chr8 (16 HSPs)
chr8 (17-65)||(220338-220386)
chr8 (17-65)||(689493-689541)
chr8 (17-65)||(733961-734009)
chr8 (17-65)||(857857-857905)
chr8 (1-55)||(14011024-14011078)
chr8 (20-65)||(1028531-1028575)
chr8 (17-54)||(11900636-11900673)
chr8 (17-62)||(12926457-12926502)
chr8 (17-62)||(22438563-22438608)
chr8 (17-65)||(216123-216171)
chr8 (17-65)||(692683-692731)
chr8 (17-65)||(696892-696940)
chr8 (17-65)||(729746-729794)
chr8 (17-65)||(853641-853689)
chr8 (34-62)||(33155366-33155394)
chr8 (17-65)||(39208845-39208893)
[»] chr7 (9 HSPs)
chr7 (17-65)||(44409271-44409319)
chr7 (29-65)||(3246465-3246501)
chr7 (17-65)||(3955021-3955069)
chr7 (17-65)||(10020445-10020493)
chr7 (17-55)||(7162654-7162692)
chr7 (11-65)||(23470477-23470531)
chr7 (17-65)||(32814898-32814946)
chr7 (17-65)||(35498468-35498516)
chr7 (20-56)||(38363233-38363269)
[»] chr6 (5 HSPs)
chr6 (3-65)||(4844200-4844262)
chr6 (17-54)||(32372515-32372552)
chr6 (17-54)||(3037576-3037613)
chr6 (13-54)||(3243883-3243924)
chr6 (17-65)||(26669635-26669683)
[»] chr4 (12 HSPs)
chr4 (17-63)||(12585537-12585583)
chr4 (11-65)||(54854155-54854209)
chr4 (20-65)||(9302634-9302679)
chr4 (17-65)||(21664149-21664197)
chr4 (17-65)||(21672913-21672961)
chr4 (17-65)||(49743433-49743481)
chr4 (1-60)||(27921951-27922010)
chr4 (17-55)||(21023338-21023376)
chr4 (20-64)||(33434730-33434774)
chr4 (17-65)||(35230271-35230319)
chr4 (1-64)||(39293583-39293647)
chr4 (17-65)||(41492475-41492523)
[»] scaffold0129 (1 HSPs)
scaffold0129 (1-62)||(7111-7172)
[»] chr3 (4 HSPs)
chr3 (17-65)||(6054201-6054249)
chr3 (17-64)||(47497149-47497196)
chr3 (17-50)||(4045625-4045658)
chr3 (17-65)||(36763502-36763551)
[»] scaffold0119 (1 HSPs)
scaffold0119 (17-65)||(1110-1158)


Alignment Details
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 40172439 - 40172483
Alignment:
Q  21 tattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  40172439 tattcatcttgaaaaaggtgaattttagccactagattacttgac 40172483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 38581646 - 38581582
Alignment:
Q  1 cgaacctcatacatcacacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    ||||||||  ||||| |||||||||||||| ||||||||| ||| ||||||||||  ||||||||    
T  38581646 cgaacctcggacatcccacttattcatcttaaaaaaggtgtattctaaccactaggctacttgac 38581582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 39334911 - 39334857
Alignment:
Q  11 acatcacacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    ||||| ||||||||||  |||||||||||||||| || |||||||| ||||||||    
T  39334911 acatcccacttattcactttgaaaaaggtgaattctagccactagactacttgac 39334857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 279828 - 279788
Alignment:
Q  11 acatcacacttattcatcttgaaaaaggtgaattttaaccac 52  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  279828 acatcccacttattcatctt-aaaaaggtgaattttaaccac 279788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 4936545 - 4936497
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattt-taaccactagattacttga 64  Q
    ||||||||||| ||||||||||||||||| |||||||| || |||||||    
T  4936545 cacttattcatattgaaaaaggtgaatttctaaccactggactacttga 4936497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 5021634 - 5021586
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattt-taaccactagattacttga 64  Q
    ||||||||||| ||||||||||||||||| |||||||| || |||||||    
T  5021634 cacttattcatattgaaaaaggtgaatttctaaccactggactacttga 5021586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 5807797 - 5807753
Alignment:
Q  11 acatcacacttattcatcttgaaaaaggtgaattttaaccactag 55  Q
    ||||| |||||||||| ||||||||||||||||| |||| |||||    
T  5807797 acatcccacttattcaccttgaaaaaggtgaattctaactactag 5807753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 9410368 - 9410304
Alignment:
Q  1 cgaacctcatacatcacacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    ||||||||| ||| | ||||||||||||||||||||||||||||||||| |||| | ||||||||    
T  9410368 cgaacctcagacaccccacttattcatcttgaaaaaggtgaattttaactactaaactacttgac 9410304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 34870305 - 34870258
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  34870305 cacttattcattttgaaaaag-tgaattttaaccactagattacttgac 34870258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 23750221 - 23750259
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactag 55  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  23750221 cacttattcatcttgaaaaaggtgaattctaaccactag 23750259  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 8904325 - 8904370
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattactt 62  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||||    
T  8904325 cacttattcattttgaaaaaggtgaattctaacaactagattactt 8904370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 13941390 - 13941438
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||||||||||||| ||||||| ||||||||| | ||||||||    
T  13941390 cacttattcatcttgaaaaaagtgaattctaaccactaaactacttgac 13941438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 16182880 - 16182928
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    ||||||||||||||||||||  |||||| ||||||||| ||||||||||    
T  16182880 cacttattcatcttgaaaaatatgaattctaaccactaaattacttgac 16182928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 7015705 - 7015662
Alignment:
Q  22 attcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||    
T  7015705 attcaccttgaaaaatgtgaattttaaccactaaattacttgac 7015662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 42908842 - 42908885
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattac 60  Q
    ||||||||| |||||||||||| ||||| |||||||||||||||    
T  42908842 cacttattcttcttgaaaaaggagaattctaaccactagattac 42908885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 195115 - 195152
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccacta 54  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  195115 cacttattcaccttgaaaaaggtgaattctaaccacta 195152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 9769604 - 9769567
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccacta 54  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  9769604 cacttattcaccttgaaaaaggtgaattctaaccacta 9769567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 2903051 - 2903003
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||||||||||| ||||| || ||||||| |||||||||    
T  2903051 cacttattcaccttgaaaaaggagaattctagccactaggttacttgac 2903003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 33844688 - 33844736
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    ||||||||||  |||||||||||||||| || |||||||| ||||||||    
T  33844688 cacttattcactttgaaaaaggtgaattatagccactagactacttgac 33844736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 33949290 - 33949242
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    ||||||||||  |||||||||||||||| || |||||||| ||||||||    
T  33949290 cacttattcactttgaaaaaggtgaattatagccactagactacttgac 33949242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29561703 - 29561756
Alignment:
Q  1 cgaacctcatacatcacacttattcatcttgaaaaaggtgaattttaaccacta 54  Q
    |||||| || ||||| |||||||||||||||||||||||||||| |||||||||    
T  29561703 cgaaccccagacatcccacttattcatcttgaaaaaggtgaattctaaccacta 29561756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 39684303 - 39684354
Alignment:
Q  11 acatcacacttattcatcttgaaaaaggtgaattttaaccactagattactt 62  Q
    ||||| |||||||||| ||| ||||||||||||| |||||||||||||||||    
T  39684303 acatcccacttattcaccttaaaaaaggtgaattctaaccactagattactt 39684354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 20186935 - 20186983
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||||||||| ||||||| ||||||||||| ||||||||    
T  20186935 cacttattcaccttgaaaaaagtgaattataaccactagactacttgac 20186983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 11246524 - 11246473
Alignment:
Q  11 acatcacacttattcatcttgaaaaaggtgaattttaaccactagattactt 62  Q
    ||||| |||||||||| ||||||||||||||||| || |||||||| |||||    
T  11246524 acatcccacttattcagcttgaaaaaggtgaattctagccactagactactt 11246473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 22687905 - 22687866
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactaga 56  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  22687905 cacttattcaccttgaaaaaggtgaattctaaccactaga 22687866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 18535983 - 18536033
Alignment:
Q  15 cacacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||||| ||||||||| ||||||| ||||||||| | ||||||||    
T  18535983 cacacttattcaccttgaaaaaagtgaattctaaccactaaactacttgac 18536033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 28768662 - 28768707
Alignment:
Q  11 acatcacacttattcatcttgaaaaaggtgaattttaaccactaga 56  Q
    ||||| ||||||| || ||||||||||||||||| |||||||||||    
T  28768662 acatctcacttatccaccttgaaaaaggtgaattctaaccactaga 28768707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 37986897 - 37986844
Alignment:
Q  11 acatcacacttattcatcttgaaaaaggtgaattttaaccactagattacttga 64  Q
    ||||| |||||||||| ||||||||||||||||| || |||||||  |||||||    
T  37986897 acatcccacttattcaccttgaaaaaggtgaattctagccactaggctacttga 37986844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 38040330 - 38040363
Alignment:
Q  11 acatcacacttattcatcttgaaaaaggtgaatt 44  Q
    ||||| ||||||||||||||||||||||||||||    
T  38040330 acatcccacttattcatcttgaaaaaggtgaatt 38040363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 220386 - 220338
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  220386 cacttattcaccttgaaaaaggtgaattctaaccactagactacttgac 220338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 689541 - 689493
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  689541 cacttattcaccttgaaaaaggtgaattctaaccactagactacttgac 689493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 734009 - 733961
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  734009 cacttattcaccttgaaaaaggtgaattctaaccactagactacttgac 733961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 857905 - 857857
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  857905 cacttattcaccttgaaaaaggtgaattctaaccactagactacttgac 857857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14011078 - 14011024
Alignment:
Q  1 cgaacctcatacatcacacttattcatcttgaaaaaggtgaattttaaccactag 55  Q
    ||||||||  ||||| |||||||||||||| ||||| ||||||| ||||||||||    
T  14011078 cgaacctcggacatcccacttattcatcttaaaaaatgtgaattctaaccactag 14011024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 1028575 - 1028531
Alignment:
Q  20 ttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||    
T  1028575 ttattcatcttaaaaaag-tgaattttaaccactagactacttgac 1028531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 11900636 - 11900673
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccacta 54  Q
    |||||||||||||||||||||||||||| || ||||||    
T  11900636 cacttattcatcttgaaaaaggtgaattctagccacta 11900673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 12926502 - 12926457
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattactt 62  Q
    ||||||||||||||||||||||| |||| || |||||||| |||||    
T  12926502 cacttattcatcttgaaaaaggtaaattctagccactagactactt 12926457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 22438608 - 22438563
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattactt 62  Q
    |||||||||| ||| ||||||||||||| ||| |||||||||||||    
T  22438608 cacttattcaccttaaaaaaggtgaattctaatcactagattactt 22438563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 216171 - 216123
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||||||||||||||||  ||||||||||| ||| ||||    
T  216171 cacttattcaccttgaaaaaggtgaatactaaccactagactacctgac 216123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 692731 - 692683
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||||||||||||||||  ||||||||||| ||| ||||    
T  692731 cacttattcaccttgaaaaaggtgaatactaaccactagactacctgac 692683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 696940 - 696892
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||||||||||||||||  ||||||||||| ||| ||||    
T  696940 cacttattcaccttgaaaaaggtgaatactaaccactagactacctgac 696892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 729794 - 729746
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||||||||||||||||  ||||||||||| ||| ||||    
T  729794 cacttattcaccttgaaaaaggtgaatactaaccactagactacctgac 729746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 853689 - 853641
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||||||||||||||||  ||||||||||| ||| ||||    
T  853689 cacttattcaccttgaaaaaggtgaatactaaccactagactacctgac 853641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 33155366 - 33155394
Alignment:
Q  34 aaaggtgaattttaaccactagattactt 62  Q
    |||||||||||||||||||||||||||||    
T  33155366 aaaggtgaattttaaccactagattactt 33155394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 39208893 - 39208845
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||| ||||||||||||| || |||||||| ||||||||    
T  39208893 cacttattcacctttaaaaaggtgaattctagccactagactacttgac 39208845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 44409271 - 44409319
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  44409271 cacttattcaccttgaaaaaggtgaattctaaccactaggttacttgac 44409319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 3246501 - 3246465
Alignment:
Q  29 ttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||||||||| ||||||||||||||||||||    
T  3246501 ttgaaaaaggtgaattctaaccactagattacttgac 3246465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 3955069 - 3955021
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||||||| ||||| |||||||||| ||| |||||||||||||    
T  3955069 cacttattcatcttaaaaaatgtgaattttagccattagattacttgac 3955021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 10020493 - 10020445
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||||||||||||||||||||| || |||||||  ||||||||    
T  10020493 cacttattcatcttgaaaaaggtgaattctacccactagcctacttgac 10020445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 7162692 - 7162654
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactag 55  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  7162692 cacttattcatcttgaaaaaggtgaattctaactactag 7162654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 23470531 - 23470477
Alignment:
Q  11 acatcacacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    ||||| || |||||||||||||||||||||| || ||||||||||| ||| ||||    
T  23470531 acatcccatttattcatcttgaaaaaggtgagttctaaccactagactacctgac 23470477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 32814898 - 32814946
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    ||||||||||| |  |||||||||||||||||||||| || ||||||||    
T  32814898 cacttattcatataaaaaaaggtgaattttaaccactggactacttgac 32814946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 35498468 - 35498516
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    ||||||||||  |||||||||||||||| || |||||| ||||||||||    
T  35498468 cacttattcactttgaaaaaggtgaattctagccactatattacttgac 35498516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 38363233 - 38363269
Alignment:
Q  20 ttattcatcttgaaaaaggtgaattttaaccactaga 56  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  38363233 ttattcatcttaaaaaaggtgaattctaaccactaga 38363269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 4844200 - 4844262
Alignment:
Q  3 aacctcatacatcacacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    ||||||| ||| | |||||||||| ||||||||| ||||||| ||||||||||| ||||||||    
T  4844200 aacctcagacacctcacttattcaccttgaaaaaagtgaattctaaccactagactacttgac 4844262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 32372515 - 32372552
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccacta 54  Q
    |||||||||| |||||||||||||||||||||||||||    
T  32372515 cacttattcaccttgaaaaaggtgaattttaaccacta 32372552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 3037613 - 3037576
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccacta 54  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  3037613 cacttattcatcttaaaaaaggtgaattctaaccacta 3037576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 3243883 - 3243924
Alignment:
Q  13 atcacacttattcatcttgaaaaaggtgaattttaaccacta 54  Q
    |||||||||||||| ||| ||||||||||||| |||||||||    
T  3243883 atcacacttattcaccttaaaaaaggtgaattctaaccacta 3243924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 26669683 - 26669635
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||||||||||||||||| || |||||| | ||||||||    
T  26669683 cacttattcaccttgaaaaaggtgaattctagccactaaactacttgac 26669635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 12585583 - 12585537
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttg 63  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||    
T  12585583 cacttattcatcttgaaaaaggtgaattctagccactagactacttg 12585537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 54854209 - 54854155
Alignment:
Q  11 acatcacacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||||||||| ||||||||| ||||||| || |||||||| ||||||||    
T  54854209 acatcacacttattcaccttgaaaaaagtgaattctagccactagactacttgac 54854155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 9302679 - 9302634
Alignment:
Q  20 ttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||||||    
T  9302679 ttattcaccttgaaaaaggtgaattttaatcactagactacttgac 9302634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 21664149 - 21664197
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||||||||| ||||||||||| ||||||||||  ||||||||    
T  21664149 cacttattcatcttgagaaaggtgaattctaaccactaggctacttgac 21664197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 21672913 - 21672961
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||||||||| ||||||||||| ||||||||||  ||||||||    
T  21672913 cacttattcatcttgagaaaggtgaattctaaccactaggctacttgac 21672961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 49743433 - 49743481
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||| | ||||||||||||||||||||||||||| | ||||||||    
T  49743433 cacttatttaccttgaaaaaggtgaattttaaccactaaactacttgac 49743481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 27921951 - 27922010
Alignment:
Q  1 cgaacctcatacatcacacttattcatcttgaaaaaggtgaattttaaccactagattac 60  Q
    |||||| || ||||| |||||||||||||| ||||| ||||||| |||||||||| ||||    
T  27921951 cgaaccccagacatctcacttattcatcttaaaaaatgtgaattctaaccactaggttac 27922010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 21023376 - 21023338
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactag 55  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  21023376 cacttattcaccttgaaaaaggtgaattctaaccactag 21023338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 33434730 - 33434774
Alignment:
Q  20 ttattcatcttgaaaaaggtgaattttaaccactagattacttga 64  Q
    ||||||| ||| ||||| |||||||| ||||||||||||||||||    
T  33434730 ttattcaccttaaaaaatgtgaatttcaaccactagattacttga 33434774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 35230319 - 35230271
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||| | ||||||| |||||||||||| |||||||| ||||||||    
T  35230319 cacttatttaccttgaaataggtgaattttagccactagactacttgac 35230271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 39293583 - 39293647
Alignment:
Q  1 cgaacctcatacatcacacttattcatcttgaaaa-aggtgaattttaaccactagattacttga 64  Q
    ||||||||| ||||| |||||||||| |||||||| ||||||||| || | |||||| |||||||    
T  39293583 cgaacctcagacatcccacttattcaccttgaaaaaaggtgaattctagctactagactacttga 39293647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 41492523 - 41492475
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||| | ||||||||||||||||| || ||||||| |||||||||    
T  41492523 cacttatttaccttgaaaaaggtgaattctagccactaggttacttgac 41492475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7111 - 7172
Alignment:
Q  1 cgaacctcatacatcacacttattcatcttgaaaaaggtgaattttaaccactagattactt 62  Q
    |||||||||||||   |||||||||||||||||||||||||||| || ||||| || |||||    
T  7111 cgaacctcatacactccacttattcatcttgaaaaaggtgaattctagccacttgactactt 7172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 6054249 - 6054201
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||||||||||||||||| ||||||||||| || |||||    
T  6054249 cacttattcaccttgaaaaaggtgaattctaaccactagactatttgac 6054201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 47497149 - 47497196
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttga 64  Q
    |||||||||| ||| ||||||||||||||||||||||| | |||||||    
T  47497149 cacttattcaccttaaaaaaggtgaattttaaccactaaactacttga 47497196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 4045658 - 4045625
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaacc 50  Q
    |||||||||||||||||||||||||||| |||||    
T  4045658 cacttattcatcttgaaaaaggtgaattctaacc 4045625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 36763502 - 36763551
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattt-taaccactagattacttgac 65  Q
    |||||||||||||| |||||||||||||| || |||||||| ||||||||    
T  36763502 cacttattcatctttaaaaaggtgaatttctagccactagactacttgac 36763551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 1110 - 1158
Alignment:
Q  17 cacttattcatcttgaaaaaggtgaattttaaccactagattacttgac 65  Q
    |||||||||| ||||||||||||||||| || |||||| | ||||||||    
T  1110 cacttattcaccttgaaaaaggtgaattctagccactaaactacttgac 1158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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