View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_38 (Length: 364)
Name: NF13940_low_38
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 12 - 350
Target Start/End: Original strand, 50519106 - 50519444
Alignment:
| Q |
12 |
atgaaaagatcaaaagttgcaatctgaaatgtacnnnnnnnnnnnnnngaagtatatgggttgtgaacatatcacaatcaaaatcacatccttatctttt |
111 |
Q |
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| T |
50519106 |
atgaaaagatcaaaagttgcaatctgaaatgtacaaaaaaacaaaaaagaagtatatgggttgtgaacatatcacaatcaaaatcacatccttatctttt |
50519205 |
T |
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| Q |
112 |
aaagttgagtagacaaatgaacaaccaacccaacttcaactcccactctactccacactgacttatttttggttgattaattttataaagtcatacgcaa |
211 |
Q |
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| T |
50519206 |
aaagttgagtagacaaatgaacaaccaacccaacttcaactcccactctactccacactgacttatttttggttgattaattttataaagtcatacgcaa |
50519305 |
T |
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| Q |
212 |
gttgttttgaatttttatatattgaggaagtcttttcatatgatcaacaatatcttaacaaactaagaaacaaatatgagatacccaacccatcacatac |
311 |
Q |
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| T |
50519306 |
attgttttgaatttttatatattgaggaagtcttttcatatgatcaacaatatcttaacaaactaagaaacaaatatgagatacccaacccatcacgtac |
50519405 |
T |
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| Q |
312 |
ctatctttttgcgatgtacattactaaaatgtaaaaaat |
350 |
Q |
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| T |
50519406 |
ctatctttttgcgatgtacattactaaaatgcaaaaaat |
50519444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 10781575 - 10781658
Alignment:
| Q |
195 |
tataaagtca-tacgcaagttgttttgaatttttatatattgaggaagtcttttcatatgatcaacaatatcttaacaaactaa |
277 |
Q |
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| T |
10781575 |
tataaagtcaatactcaagttgttttgaatttatatatattgaggaagtcgtttaatatgatcaacaatatcttaacaaactaa |
10781658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 307
Target Start/End: Original strand, 10781670 - 10781701
Alignment:
| Q |
276 |
aagaaacaaatatgagatacccaacccatcac |
307 |
Q |
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| T |
10781670 |
aagaaacaaatatgagatacccaacccatcac |
10781701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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