View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13940_low_4 (Length: 742)

Name: NF13940_low_4
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13940_low_4
NF13940_low_4
[»] chr4 (51 HSPs)
chr4 (14-742)||(2621100-2621828)
chr4 (552-709)||(2367648-2367805)
chr4 (302-679)||(2467213-2467587)
chr4 (302-442)||(2518904-2519044)
chr4 (544-679)||(2486229-2486364)
chr4 (308-443)||(2547221-2547356)
chr4 (302-425)||(2533984-2534107)
chr4 (567-662)||(5106333-5106428)
chr4 (544-662)||(5102106-5102224)
chr4 (153-245)||(2373666-2373761)
chr4 (556-677)||(2547466-2547587)
chr4 (373-442)||(5102326-5102395)
chr4 (308-432)||(5106558-5106685)
chr4 (568-689)||(12124770-12124891)
chr4 (154-245)||(2368103-2368197)
chr4 (565-665)||(2472035-2472135)
chr4 (309-360)||(2367982-2368033)
chr4 (308-407)||(2490805-2490904)
chr4 (556-679)||(2491062-2491185)
chr4 (152-258)||(2471574-2471680)
chr4 (544-662)||(2519155-2519273)
chr4 (302-360)||(2525426-2525484)
chr4 (310-360)||(5035301-5035351)
chr4 (310-416)||(12124524-12124630)
chr4 (544-605)||(2382562-2382623)
chr4 (189-274)||(2382915-2383000)
chr4 (304-405)||(2475953-2476054)
chr4 (380-444)||(2361198-2361262)
chr4 (312-360)||(2546825-2546873)
chr4 (145-253)||(5102506-5102614)
chr4 (544-679)||(2525679-2525814)
chr4 (310-360)||(2373548-2373598)
chr4 (198-244)||(12124406-12124452)
chr4 (568-709)||(2373212-2373352)
chr4 (306-433)||(2393839-2393965)
chr4 (469-658)||(2477421-2477604)
chr4 (218-262)||(2167816-2167860)
chr4 (304-352)||(2363162-2363210)
chr4 (380-440)||(2381630-2381690)
chr4 (550-650)||(2391036-2391136)
chr4 (380-440)||(2391258-2391318)
chr4 (152-260)||(2477095-2477203)
chr4 (304-336)||(2625602-2625634)
chr4 (205-245)||(12126466-12126506)
chr4 (472-531)||(2486145-2486204)
chr4 (544-679)||(5035544-5035679)
chr4 (155-262)||(5106722-5106829)
chr4 (634-676)||(1517029-1517071)
chr4 (380-433)||(2382747-2382800)
chr4 (380-433)||(2482529-2482582)
chr4 (390-427)||(2486066-2486103)
[»] chr7 (1 HSPs)
chr7 (565-662)||(2576415-2576512)
[»] chr1 (1 HSPs)
chr1 (565-665)||(15837979-15838079)
[»] chr8 (1 HSPs)
chr8 (301-354)||(18314718-18314771)
[»] chr5 (1 HSPs)
chr5 (634-690)||(12846948-12847004)
[»] chr6 (2 HSPs)
chr6 (379-442)||(6423906-6423969)
chr6 (380-442)||(10579090-10579152)


Alignment Details
Target: chr4 (Bit Score: 693; Significance: 0; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 14 - 742
Target Start/End: Complemental strand, 2621828 - 2621100
Alignment:
Q  14 aagtttgctttgcagtaacaaccaaatcgaaaatcaaattctgattcaacaataaatatattacatcactatgaagtatcgtcatctaaatagatattcc 113  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621828 aagtttgctttgcagtagcaaccaaatcgaaaatcaaattctgattcaataataaatatattacatcactatgaagtatcgtcatctaaatagatattcc 2621729  T
Q  114 tttgcttcattaaaaccaatcagtcacgaccacatctcgaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621728 tttgcttcattaaaaccaatcagtcacgaccacatctcgaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgat 2621629  T
Q  214 aaattaattttgcggagtttgggaagtgccaacaaccgatcatcatcatctagctcaaaatcatagctagtagcaataacaggatggctaaggttgagtt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621628 aaattaattttgcggagtttgggaagtgccaacaaccgatcatcatcatctagctcaaaatcatagctagtagcaataacaggatggctaaggttgagtt 2621529  T
Q  314 cttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcatgttttt 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||    
T  2621528 cttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatttttcatattttt 2621429  T
Q  414 ggagaaagctcgcaacccatctgtaggaatattgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggatatattagtaagaagc 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621428 ggagaaagctcgcaacccatctgtaggaatattgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggatatattagtaagaagc 2621329  T
Q  514 tcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcgg 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621328 tcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcgg 2621229  T
Q  614 agattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagaggttccaagtaatggttgttgtcgccgtcgtcaac 713  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  2621228 agattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggatacgagggagagaggttcccagtaatggttgttgtcgccatcgtcaac 2621129  T
Q  714 taactggaagatacactcccaccactcct 742  Q
    ||||| |||||||||||||||||||||||    
T  2621128 taacttgaagatacactcccaccactcct 2621100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 552 - 709
Target Start/End: Complemental strand, 2367805 - 2367648
Alignment:
Q  552 gagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggac 651  Q
    |||||||||||  || |||||||| | ||| ||||||  || ||||||||| ||||||||||| ||||  |||||||| || |||||||||||||||||     
T  2367805 gagggatgtgaggttggggaacctttggaaaaggcgataaaggaaagggattgttttatcggacattgctatggagaatcggagacggttggtgatggag 2367706  T
Q  652 aaaaactgtttggacacgagggagagaggttccaagtaatggttgttgtcgccgtcgt 709  Q
    | ||| |||||||| |||| ||| ||||||||||||||  |||||||||||| |||||    
T  2367705 agaaattgtttggagacgatggaaagaggttccaagtagcggttgttgtcgctgtcgt 2367648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 302 - 679
Target Start/End: Original strand, 2467213 - 2467587
Alignment:
Q  302 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattg---attcggtaacaagtgaaagatgtcaa 398  Q
    ||||| |||| |||||||||||||||||||||||||||| |||||| ||||| ||||||  ||| | |      ||||||||||||||||  ||||||||    
T  2467213 taaggatgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaa 2467312  T
Q  399 atttttcatgtttttggagaaagctcgcaacccatctgtaggaatattgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggat 498  Q
    ||||||||| | |||||||||||||||||||||||||| |||||   |  ||| |   ||| ||| ||| || ||||||| ||| | ||||||||||||     
T  2467313 atttttcatctctttggagaaagctcgcaacccatctgcaggaaccgt--tatgggg-tggtagagagtgagggatttgaggtccaaagggaaagtggag 2467409  T
Q  499 atattagtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaag 598  Q
    || || ||||||||  ||| |||||||||||||   ||||     |||||||  |  ||| ||||||| |||||||| || ||||| ||| |||  ||||    
T  2467410 attttggtaagaagtgcgttgaggtcactttctaccgagaga---gtgatgtcaattgatctgatattggggaacctttcaaagagacgatgaagtaaag 2467506  T
Q  599 ggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagag 679  Q
    |||| |||   ||||| || | || |||||| || |||| |||||| ||||||||||||||||| || |||| ||||||||    
T  2467507 ggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagag 2467587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 302 - 442
Target Start/End: Original strand, 2518904 - 2519044
Alignment:
Q  302 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatt 401  Q
    ||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |||| |  || |||   |||||||||| | ||||||||||    
T  2518904 taaggatgagttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaatt 2519003  T
Q  402 tttcatgtttttggagaaagctcgcaacccatctgtaggaa 442  Q
    |||||||||||  || |||||| ||||||| ||| ||||||    
T  2519004 tttcatgttttgagacaaagcttgcaacccttctttaggaa 2519044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 544 - 679
Target Start/End: Original strand, 2486229 - 2486364
Alignment:
Q  544 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 643  Q
    ||||| ||| ||||||| | |||||||||||  |  ||||| ||| ||| ||||||||| ||||| |||||||||||||  ||||| || ||||||||||    
T  2486229 gtgatattgtgggatgtaacattagggaacccataaaagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttgg 2486328  T
Q  644 tgatggacaaaaactgtttggacacgagggagagag 679  Q
    ||||||||| ||||||||| || |||||||||||||    
T  2486329 tgatggacagaaactgttttgagacgagggagagag 2486364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 308 - 443
Target Start/End: Original strand, 2547221 - 2547356
Alignment:
Q  308 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcat 407  Q
    |||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||     |||||  | ||||| ||| ||| ||||||||||||||    
T  2547221 tgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcat 2547320  T
Q  408 gtttttggagaaagctcgcaacccatctgtaggaat 443  Q
     ||||  || |||||||||||||||| || ||||||    
T  2547321 cttttcagacaaagctcgcaacccatttgcaggaat 2547356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 302 - 425
Target Start/End: Original strand, 2533984 - 2534107
Alignment:
Q  302 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatt 401  Q
    ||||| |||||||||| ||||||||||||||||||||||  ||||| ||||||||||||  ||| |   | ||| | |||||||||| |||||| |||||    
T  2533984 taaggatgagttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatt 2534083  T
Q  402 tttcatgtttttggagaaagctcg 425  Q
    |||||| || ||||| ||||||||    
T  2534084 tttcatcttcttggacaaagctcg 2534107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 567 - 662
Target Start/End: Complemental strand, 5106428 - 5106333
Alignment:
Q  567 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 662  Q
    ||||||||| | |||||||||| |||||||||||||||||| ||  | ||||||||  ||||| ||  ||||||||||||||||||||||||||||    
T  5106428 agggaaccttttgaagaggcgatgaatgaaagggatggtttgattagtgattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttt 5106333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 544 - 662
Target Start/End: Complemental strand, 5102224 - 5102106
Alignment:
Q  544 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 643  Q
    ||||||||||| |||||||  ||||||||||| ||||| ||| ||||||||||||||||||||  ||| | ||||||||  ||||| || ||||  || |    
T  5102224 gtgatgttgagtgatgtgacgttagggaacctttcgaaaaggagaggaatgaaagggatggttcgatcagtgattgtgaccgagaatcgaagactattag 5102125  T
Q  644 tgatggacaaaaactgttt 662  Q
    |||| ||||||||||||||    
T  5102124 tgatagacaaaaactgttt 5102106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 2373761 - 2373666
Alignment:
Q  153 aagaaggttacagttcttgcagagagagttaacatattggcgatc---gatgaaattacctgataaattaattttgcggagtttgggaagtgccaa 245  Q
    |||||||||||| || ||| ||||| |||||| | ||||| ||||   |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  2373761 aagaaggttacaatttttgaagagatagttaatagattggtgatctttgatgcaattacctgataaattaatcttgcggagtttgggaagtgccaa 2373666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 556 - 677
Target Start/End: Original strand, 2547466 - 2547587
Alignment:
Q  556 gatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaa 655  Q
    |||||||| ||||||||||| | ||||| | |||||| | || ||||| | | |  |||||||||||  |||||||| ||||||||||||||||||| ||    
T  2547466 gatgtgatgttagggaacctttggaagaagtgaggaagggaaaggatgatatgactggagattgtgactgagaaccggagacggttggtgatggacagaa 2547565  T
Q  656 actgtttggacacgagggagag 677  Q
    |||||||||| |||| ||||||    
T  2547566 actgtttggagacgatggagag 2547587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 373 - 442
Target Start/End: Complemental strand, 5102395 - 5102326
Alignment:
Q  373 attcggtaacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaa 442  Q
    |||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||| | ||||||||    
T  5102395 attcggtaacaagtgatagatgtcaaatttttcatcttttgggagaatgctcgcaacccttttgtaggaa 5102326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 308 - 432
Target Start/End: Complemental strand, 5106685 - 5106558
Alignment:
Q  308 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggatttt---attgattcggtaacaagtgaaagatgtcaaattttt 404  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||| |||||   |       |   |||||||||||||||| |||||||||||||||    
T  5106685 tgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtctacacccgaagcaattcggtaacaagtgatagatgtcaaattttt 5106586  T
Q  405 catgtttttggagaaagctcgcaaccca 432  Q
    ||| |||  |||||||||||||||||||    
T  5106585 catctttagggagaaagctcgcaaccca 5106558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 568 - 689
Target Start/End: Original strand, 12124770 - 12124891
Alignment:
Q  568 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 667  Q
    |||||||| | |||||||||   || ||||||||| |||| ||| ||||||| |||||| ||  | ||||||||||||||||| | ||| |||||||| |    
T  12124770 gggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggaaaattggagacggttggtgatggagagaaattgtttggaga 12124869  T
Q  668 cgagggagagaggttccaagta 689  Q
    | | ||||||||||||||||||    
T  12124870 caatggagagaggttccaagta 12124891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 2368197 - 2368103
Alignment:
Q  154 agaaggttacagttcttgcagagagagttaacatattggcgatcgatga---aattacctgataaattaattttgcggagtttgggaagtgccaa 245  Q
    ||||||| |||||||||| ||||| |||||| | |||| |||||  |||   ||||||| ||||||||||| |||||||||||||||||||||||    
T  2368197 agaaggtcacagttcttgaagagatagttaatagattgtcgatctttgatccaattaccagataaattaatcttgcggagtttgggaagtgccaa 2368103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 565 - 665
Target Start/End: Original strand, 2472035 - 2472135
Alignment:
Q  565 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 664  Q
    ||||||||||| ||||||||| || ||| ||||||||| |||| |  | ||||||||| |||||| |  ||||| ||||||||||| |||||||||||||    
T  2472035 ttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcagagacgattggtgatggagaaaaactgtttgg 2472134  T
Q  665 a 665  Q
    |    
T  2472135 a 2472135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 2368033 - 2367982
Alignment:
Q  309 gagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 360  Q
    |||||||||||||||||||||||||||||||| |||||| |||||| |||||    
T  2368033 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttg 2367982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 308 - 407
Target Start/End: Original strand, 2490805 - 2490904
Alignment:
Q  308 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcat 407  Q
    ||||||| |||||||||||||||||||||||||  || || ||||||||||||  |||     | ||||| |||||||||| ||||||||||||||||||    
T  2490805 tgagttcgtcgagtaaagggaaacaatcagcaataaaaaagagatcattcttgttgataaacctcattcgataacaagtgagagatgtcaaatttttcat 2490904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 679
Target Start/End: Original strand, 2491062 - 2491185
Alignment:
Q  556 gatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaa 655  Q
    ||||| || ||||||||||| || ||||| |||  || ||||||||| |||  ||||||||||||||  || || || |||||||| |||||||||| ||    
T  2491062 gatgtaatgttagggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaa 2491161  T
Q  656 actgtttggacacgagggagagag 679  Q
    ||||||| || ||||| |||||||    
T  2491162 actgttttgagacgagtgagagag 2491185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 258
Target Start/End: Original strand, 2471574 - 2471680
Alignment:
Q  152 gaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccg 251  Q
    ||||||||||||| ||||||||||||  | ||| | |||||||| | || || |||||  |||||| ||| |||||||||||||||||| |||||||  |    
T  2471574 gaagaaggttacaattcttgcagagatcgataatagattggcgaaccatcaatttaccatataaataaatcttgcggagtttgggaagttccaacaattg 2471673  T
Q  252 atcatca 258  Q
    |||||||    
T  2471674 atcatca 2471680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 544 - 662
Target Start/End: Original strand, 2519155 - 2519273
Alignment:
Q  544 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 643  Q
    ||||||||||| ||||| |  || |||||||| || ||||| ||| ||| ||||||||| |||| ||| ||||||||||  ||| | || | ||||||||    
T  2519155 gtgatgttgagtgatgtaacgttggggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttgg 2519254  T
Q  644 tgatggacaaaaactgttt 662  Q
    ||||||||| |||||||||    
T  2519255 tgatggacagaaactgttt 2519273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 2525426 - 2525484
Alignment:
Q  302 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 360  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||||  ||||||||||||    
T  2525426 taaggatgagttcttcgagtagagggaaacaatcagcaatgaagagcagatcattcttg 2525484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 5035301 - 5035351
Alignment:
Q  310 agttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 360  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  5035301 agttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttg 5035351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 310 - 416
Target Start/End: Original strand, 12124524 - 12124630
Alignment:
Q  310 agttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcatgt 409  Q
    |||||||| |||||||||||||||||||||| |||||| |||||| ||||  | ||   | | |||| | ||||||||| ||| |||||||||||||| |    
T  12124524 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagagaggtcaaatttttcatct 12124623  T
Q  410 ttttgga 416  Q
    |||||||    
T  12124624 ttttgga 12124630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 605
Target Start/End: Complemental strand, 2382623 - 2382562
Alignment:
Q  544 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggt 605  Q
    ||||| ||||||||||||| |||||||| |||   |||||||||||||||||||||||||||    
T  2382623 gtgatattgagggatgtgacattagggagccttcggaagaggcgaggaatgaaagggatggt 2382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 2383000 - 2382915
Alignment:
Q  189 ttggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccgatcatcatcatctagctcaaaat 274  Q
    ||||| ||||||| |||||||  | |||||||| || |||||||||||||||||||| ||  ||| ||||||||||||| ||||||    
T  2383000 ttggctatcgatggaattaccatacaaattaatctttcggagtttgggaagtgccaaaaattgattatcatcatctagcacaaaat 2382915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 304 - 405
Target Start/End: Original strand, 2475953 - 2476054
Alignment:
Q  304 aggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttt 403  Q
    ||||||| ||||||||||||||| || |||| ||| || ||||| ||||||| |||| |||| | |||  ||  ||||||||||| ||||||||||||||    
T  2475953 aggttgatttcttcgagtaaaggaaagcaattagctagaaagaagagatcatccttgtggatataattctttttgtaacaagtgagagatgtcaaatttt 2476052  T
Q  404 tc 405  Q
    ||    
T  2476053 tc 2476054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 2361262 - 2361198
Alignment:
Q  380 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaata 444  Q
    ||||||||| |||||||||||||||||| |||||||| |||||||| | ||||  ||||||||||    
T  2361262 aacaagtgagagatgtcaaatttttcatttttttggacaaagctcgtagcccacttgtaggaata 2361198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 2546825 - 2546873
Alignment:
Q  312 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 360  Q
    ||||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  2546825 ttcttcgagtaaaggaaaacaatcagcaatgaagaataaatcattcttg 2546873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 5102614 - 5102506
Alignment:
Q  145 acatctcgaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgcca 244  Q
    |||||| ||||||||| ||||||| |||| |||  ||||| | |||||  | | ||||||||||  ||||||  ||| ||||||||||||||||||||||    
T  5102614 acatcttgaagaaggtcacagttcctgcaaagatggttaatagattgggtacctatgaaattacgagataaaacaatcttgcggagtttgggaagtgcca 5102515  T
Q  245 acaaccgat 253  Q
    |||| ||||    
T  5102514 acaatcgat 5102506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 679
Target Start/End: Original strand, 2525679 - 2525814
Alignment:
Q  544 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 643  Q
    ||||| ||||| ||||  || ||||||||||| || ||||| |||  ||  |||||||| |||  || |||||||||||   |||| || |||| |||||    
T  2525679 gtgatattgagtgatgcaatgttagggaacctttcaaagagacgattaagaaaagggatagttgcattggagattgtgaccaagaatcgaagactgttgg 2525778  T
Q  644 tgatggacaaaaactgtttggacacgagggagagag 679  Q
    ||||||||| ||||||||| || |||||||||||||    
T  2525779 tgatggacagaaactgttttgagacgagggagagag 2525814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 2373598 - 2373548
Alignment:
Q  310 agttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 360  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||| |||||    
T  2373598 agttcttcgagcaaagggaaacaatcagcaatgaagaagagatcactcttg 2373548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 12124406 - 12124452
Alignment:
Q  198 gatgaaattacctgataaattaattttgcggagtttgggaagtgcca 244  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  12124406 gatgcaattaccagataaattaatcttgcggagtttgggaagtgcca 12124452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 709
Target Start/End: Complemental strand, 2373352 - 2373212
Alignment:
Q  568 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 667  Q
    |||||||| | ||||||||||  || |||||| || ||||||||| | ||||  |||||||| || ||| | ||||||||||| | ||| |||||||| |    
T  2373352 gggaacctttggaagaggcgattaaggaaaggaattgttttatcg-acattgctatggagaatcggagatgattggtgatggagagaaattgtttggaaa 2373254  T
Q  668 cgagggagagaggttccaagtaatggttgttgtcgccgtcgt 709  Q
    | | |||||||||||| |||||  || |||||| ||||||||    
T  2373253 caacggagagaggttcgaagtagcggctgttgttgccgtcgt 2373212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 433
Target Start/End: Complemental strand, 2393965 - 2393839
Alignment:
Q  306 gttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaa-ttttt 404  Q
    ||||||||||| ||||||||||||| ||||||||| ||| || ||| ||||||||| |||  || | |||   ||  | |||| |||||||||| |||||    
T  2393965 gttgagttcttggagtaaagggaaaaaatcagcaatgaaaaagagaccattcttgcagataatagtcatt--ttagaatgtgagagatgtcaaatttttt 2393868  T
Q  405 catgtttttggagaaagctcgcaacccat 433  Q
    ||| |||| ||| ||||||||||||||||    
T  2393867 catcttttgggacaaagctcgcaacccat 2393839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 658
Target Start/End: Original strand, 2477421 - 2477604
Alignment:
Q  469 agcgatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattag 568  Q
    |||||| ||| ||||| ||  ||||||||||| |  ||||||||||| || |||||||||||| | ||||     |||||||| ||||||||||  ||||    
T  2477421 agcgatctgaggtctatagctaaagtggatatttgggtaagaagctcatcaaggtcactttctct-gaga-----gtgatgtttagggatgtgacgttag 2477514  T
Q  569 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaact 658  Q
    ||||||| |  |||||  || ||| | |||||||||||| |||||| ||||| |  ||||| || |||| |||||| ||||||| |||||    
T  2477515 ggaacctttgaaagagaggatgaagggaagggatggtttgatcggaaattgtcacagagaatcgaagactgttggttatggacagaaact 2477604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 2167816 - 2167860
Alignment:
Q  218 taattttgcggagtttgggaagtgccaacaaccgatcatcatcat 262  Q
    ||||||| ||||||||||||||||||||| | |||||||||||||    
T  2167816 taattttccggagtttgggaagtgccaaccatcgatcatcatcat 2167860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 2363210 - 2363162
Alignment:
Q  304 aggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagat 352  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||| ||||    
T  2363210 aggttgagttcgtcgaggaaagggaaacaatcagcaatgaagaagagat 2363162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 2381690 - 2381630
Alignment:
Q  380 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtagg 440  Q
    ||||||| | ||| |||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  2381690 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttagg 2381630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 2391136 - 2391036
Alignment:
Q  550 ttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatgg 649  Q
    ||||||||||||| ||||| |||||  | |||||   |||||||||||||||||||||  | || |||| |||||||||| || |||  |||||||||||    
T  2391136 ttgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatgg 2391037  T
Q  650 a 650  Q
    |    
T  2391036 a 2391036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 2391318 - 2391258
Alignment:
Q  380 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtagg 440  Q
    ||||||| | ||| |||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  2391318 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttagg 2391258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 2477095 - 2477203
Alignment:
Q  152 gaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccg 251  Q
    |||||||||  ||||||||||||||| ||| || | || | ||| | |||||||||   ||||||  ||| ||||||||||||||||| ||||||||  |    
T  2477095 gaagaaggtcgcagttcttgcagagatagtcaatagatcgtcgacccatgaaattaggagataaagcaatcttgcggagtttgggaagcgccaacaattg 2477194  T
Q  252 atcatcatc 260  Q
    |||||||||    
T  2477195 atcatcatc 2477203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 2625634 - 2625602
Alignment:
Q  304 aggttgagttcttcgagtaaagggaaacaatca 336  Q
    |||||||||||||||||||||||||||||||||    
T  2625634 aggttgagttcttcgagtaaagggaaacaatca 2625602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 12126466 - 12126506
Alignment:
Q  205 ttacctgataaattaattttgcggagtttgggaagtgccaa 245  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  12126466 ttaccagataaattaatcttgcggagtttgggaagtgccaa 12126506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 531
Target Start/End: Original strand, 2486145 - 2486204
Alignment:
Q  472 gatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttct 531  Q
    ||||||| ||| | |||||||||||| ||||  |||||||||||| ||||||||||||||    
T  2486145 gatttgaggtccaaagggaaagtggagatatgtgtaagaagctcgccgaggtcactttct 2486204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 679
Target Start/End: Original strand, 5035544 - 5035679
Alignment:
Q  544 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 643  Q
    ||||| ||||| ||||| |||||||||||||| || ||||| |||  || ||||||||| |||   || |||||| |||   |||| || ||||||||||    
T  5035544 gtgatattgagtgatgtaatattagggaacctttcaaagagacgactaaggaaagggattgttgcctcagagattttgaccaagaatcgaagacggttgg 5035643  T
Q  644 tgatggacaaaaactgtttggacacgagggagagag 679  Q
    ||||||| | ||||||||| || |||| ||| ||||    
T  5035644 tgatggagagaaactgttttgaaacgaaggaaagag 5035679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 5106829 - 5106722
Alignment:
Q  155 gaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccgatc 254  Q
    |||||| |||||||||||| |||  ||||| | |||||  | | | |||||||| ||||||   ||| ||||||||||||||||||||||| ||  ||||    
T  5106829 gaaggtcacagttcttgcaaagatggttaatagattggttacccaggaaattacgtgataacgcaatcttgcggagtttgggaagtgccaataattgatc 5106730  T
Q  255 atcatcat 262  Q
    ||||||||    
T  5106729 atcatcat 5106722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 634 - 676
Target Start/End: Complemental strand, 1517071 - 1517029
Alignment:
Q  634 agacggttggtgatggacaaaaactgtttggacacgagggaga 676  Q
    |||||||||||||||||||| || |||||||| ||||||||||    
T  1517071 agacggttggtgatggacaagaattgtttggaaacgagggaga 1517029  T

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Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 2382800 - 2382747
Alignment:
Q  380 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccat 433  Q
    ||||| ||||||| ||||| |||||||| |||||||| ||||||||||| ||||    
T  2382800 aacaaatgaaagaagtcaattttttcatctttttggacaaagctcgcaatccat 2382747  T

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Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 433
Target Start/End: Original strand, 2482529 - 2482582
Alignment:
Q  380 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccat 433  Q
    ||||||||| |||||||||||||||||| ||||| || | ||||| ||||||||    
T  2482529 aacaagtgagagatgtcaaatttttcatctttttagatagagctctcaacccat 2482582  T

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Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 427
Target Start/End: Original strand, 2486066 - 2486103
Alignment:
Q  390 agatgtcaaatttttcatgtttttggagaaagctcgca 427  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  2486066 agatgtcaaatttttcatctttttggacaaagctcgca 2486103  T

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Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 565 - 662
Target Start/End: Complemental strand, 2576512 - 2576415
Alignment:
Q  565 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 662  Q
    ||||||| ||| ||||||||||||  ||||||||||||||||  ||||| ||||||||  ||||| || ||||| ||||||||||| |||||||||||    
T  2576512 ttagggatcctttcgaagaggcgacaaatgaaagggatggttcaatcggtgattgtgaccgagaatcgaagacgattggtgatggataaaaactgttt 2576415  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 565 - 665
Target Start/End: Complemental strand, 15838079 - 15837979
Alignment:
Q  565 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 664  Q
    ||||||||||| | |||||||  ||||||||||||||| |||| |||   |||| ||| |||||| || ||||||||||||||||| | |||||||||||    
T  15838079 ttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaaactgtttgg 15837980  T
Q  665 a 665  Q
    |    
T  15837979 a 15837979  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 18314771 - 18314718
Alignment:
Q  301 ctaaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatca 354  Q
    ||||||| |||||||||||| ||||||||||||||||||| || ||| ||||||    
T  18314771 ctaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 18314718  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 634 - 690
Target Start/End: Original strand, 12846948 - 12847004
Alignment:
Q  634 agacggttggtgatggacaaaaactgtttggacacgagggagagaggttccaagtaa 690  Q
    ||||||||||||||||| |  ||||| ||||| |||||||||||| |||||||||||    
T  12846948 agacggttggtgatggagaggaactgcttggaaacgagggagagatgttccaagtaa 12847004  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 442
Target Start/End: Original strand, 6423906 - 6423969
Alignment:
Q  379 taacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaa 442  Q
    |||||||||| ||| |||||| || | ||||||| |||||||||||||||||||| ||| ||||    
T  6423906 taacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccatttgtgggaa 6423969  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 380 - 442
Target Start/End: Complemental strand, 10579152 - 10579090
Alignment:
Q  380 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaa 442  Q
    |||||||||||  ||||||| || | ||||||| |||||||||||| ||||||||||| ||||    
T  10579152 aacaagtgaaacttgtcaaagttgttatgttttgggagaaagctcgtaacccatctgtgggaa 10579090  T

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