View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_41 (Length: 341)
Name: NF13940_low_41
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 27502739 - 27502897
Alignment:
| Q |
1 |
ataagtgggtttggaaacgtgaatagcacatggtgcatgtgagtttgggtttggattggtagcttaatttttaagtatctatctaattgttttcttgtgc |
100 |
Q |
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| T |
27502739 |
ataaatgggtttggaaacgtgagtagcacgtggtgcatgtgagtttgggtttggattggtagcttaatttttaagtatctatctaattgtttt-ttgtgc |
27502837 |
T |
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| Q |
101 |
atgtttggattgctaattaagtgttttattttgtcaaatagccaacttcattaattagta |
160 |
Q |
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| T |
27502838 |
aagtttgaattgctaattaagtgttttattttgtcaaatagccaacttcgttaattagta |
27502897 |
T |
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Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 27503048 - 27503137
Alignment:
| Q |
163 |
ttgttagaggatggagttgaattcatgatcttcttatcacagtgattgctaacgaaatatttgtccaatattcaatgaatatgttaaaat |
252 |
Q |
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| T |
27503048 |
ttgttagaggatggagttgaattcacgatcttcttatcacagtgattgctaactaaacatttgtccaatattcaatgaatatgtcaaaat |
27503137 |
T |
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