View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_42 (Length: 339)
Name: NF13940_low_42
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 14 - 323
Target Start/End: Complemental strand, 47469878 - 47469569
Alignment:
| Q |
14 |
gaagtagagcacatgctgcattctctttcgccgttggagtgcctgttttcaaagcttttaccataggtttaatcgcaccagaagaagtgataatctcttt |
113 |
Q |
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| T |
47469878 |
gaagtagagcacatgctgcattctctttcgccgttggagtgcctgttttcaaagcttttaccataggtttaatcgcaccagaagaagtgataatctcttt |
47469779 |
T |
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| Q |
114 |
attttcatcacacagtgatagatttaaaatcgctgtcacgatgtattcttgcagttgaagatccatcaccggtgactgtgatgataaaagtgaaatcaac |
213 |
Q |
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| T |
47469778 |
attttcatcacacagtgatagatttaaaatcgctgtcacgatgtattcttgcagttgaagatccatcaccggtgactgtgatgataaaagtgaaatcaac |
47469679 |
T |
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| Q |
214 |
ggtttgatagcgccggcttttgcgattctgagacgattttctgatttgtttttggcaagtaatctgatttccattgtagcttgtttttgttgatcaatgg |
313 |
Q |
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| T |
47469678 |
ggtttgatagcgccggcttttgcgattctgagacgattttctgatttgtttttggcaagtaatctgatttccattgtagcttgtttttgttgatcaatgg |
47469579 |
T |
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| Q |
314 |
aagaggaatt |
323 |
Q |
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| T |
47469578 |
aagaggaatt |
47469569 |
T |
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