View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13940_low_44 (Length: 330)

Name: NF13940_low_44
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13940_low_44
NF13940_low_44
[»] chr3 (18 HSPs)
chr3 (10-232)||(18996576-18996798)
chr3 (10-232)||(18999115-18999337)
chr3 (10-231)||(11685726-11685948)
chr3 (10-232)||(8082326-8082549)
chr3 (18-232)||(28246856-28247071)
chr3 (10-232)||(45572660-45572883)
chr3 (10-232)||(41957979-41958203)
chr3 (25-232)||(24373072-24373279)
chr3 (10-232)||(37609077-37609301)
chr3 (10-229)||(53151517-53151739)
chr3 (25-232)||(30801002-30801210)
chr3 (10-232)||(13696641-13696872)
chr3 (10-196)||(3777296-3777483)
chr3 (91-232)||(30260656-30260797)
chr3 (93-233)||(20307321-20307461)
chr3 (10-68)||(20307463-20307521)
chr3 (148-199)||(48332116-48332167)
chr3 (91-137)||(30260816-30260862)
[»] chr6 (3 HSPs)
chr6 (10-232)||(4653578-4653800)
chr6 (25-231)||(33756400-33756603)
chr6 (10-232)||(24765199-24765428)
[»] chr2 (5 HSPs)
chr2 (10-232)||(15805736-15805958)
chr2 (10-232)||(30518452-30518677)
chr2 (18-232)||(27641025-27641243)
chr2 (10-232)||(5614519-5614742)
chr2 (10-232)||(32597356-32597581)
[»] chr4 (18 HSPs)
chr4 (10-232)||(56080602-56080824)
chr4 (10-229)||(39502596-39502817)
chr4 (10-232)||(40591042-40591264)
chr4 (10-232)||(44506120-44506342)
chr4 (10-230)||(26695830-26696052)
chr4 (25-232)||(24072392-24072601)
chr4 (10-232)||(9033941-9034165)
chr4 (10-232)||(29051938-29052165)
chr4 (26-229)||(39499257-39499462)
chr4 (10-230)||(37995456-37995676)
chr4 (91-232)||(2623309-2623450)
chr4 (233-324)||(53716432-53716523)
chr4 (25-230)||(127938-128142)
chr4 (91-232)||(45620392-45620532)
chr4 (148-233)||(51790234-51790319)
chr4 (10-80)||(31335035-31335105)
chr4 (10-68)||(45620308-45620365)
chr4 (10-68)||(51790093-51790151)
[»] chr7 (15 HSPs)
chr7 (25-232)||(30586064-30586271)
chr7 (10-232)||(20372421-20372647)
chr7 (25-232)||(31293026-31293234)
chr7 (10-229)||(47266253-47266475)
chr7 (10-231)||(41743126-41743349)
chr7 (10-199)||(44079874-44080063)
chr7 (92-232)||(49142011-49142151)
chr7 (145-232)||(32031364-32031451)
chr7 (92-223)||(31577403-31577533)
chr7 (11-232)||(22916661-22916883)
chr7 (158-232)||(27620193-27620267)
chr7 (25-80)||(49141941-49141996)
chr7 (148-216)||(2659723-2659790)
chr7 (25-81)||(31577553-31577609)
chr7 (12-80)||(43174979-43175047)
[»] chr8 (15 HSPs)
chr8 (10-232)||(38526487-38526708)
chr8 (25-232)||(35563729-35563936)
chr8 (10-232)||(18916125-18916351)
chr8 (25-232)||(2734852-2735061)
chr8 (25-232)||(38567513-38567721)
chr8 (10-232)||(41486472-41486695)
chr8 (91-232)||(9686368-9686509)
chr8 (18-232)||(1197540-1197758)
chr8 (25-232)||(24697549-24697756)
chr8 (91-232)||(11661332-11661473)
chr8 (152-232)||(1996320-1996400)
chr8 (10-81)||(2001462-2001533)
chr8 (10-80)||(43596252-43596322)
chr8 (11-68)||(43596024-43596081)
chr8 (159-229)||(43596095-43596165)
[»] chr1 (13 HSPs)
chr1 (10-232)||(5555198-5555420)
chr1 (18-232)||(45360175-45360390)
chr1 (27-231)||(43069011-43069215)
chr1 (38-232)||(32550356-32550549)
chr1 (10-232)||(19565168-19565392)
chr1 (25-232)||(14236401-14236603)
chr1 (10-215)||(21620060-21620267)
chr1 (10-216)||(40125432-40125639)
chr1 (25-229)||(4643592-4643797)
chr1 (25-232)||(3656526-3656727)
chr1 (59-232)||(6694023-6694199)
chr1 (146-229)||(3027730-3027813)
chr1 (19-68)||(3027900-3027949)
[»] chr5 (10 HSPs)
chr5 (10-232)||(22213269-22213492)
chr5 (10-232)||(25897901-25898125)
chr5 (38-232)||(36275538-36275734)
chr5 (10-232)||(42394010-42394239)
chr5 (25-232)||(26945665-26945872)
chr5 (25-231)||(30493876-30494084)
chr5 (25-231)||(30534219-30534427)
chr5 (25-232)||(26674060-26674266)
chr5 (18-232)||(13946366-13946576)
chr5 (92-232)||(11740537-11740677)
[»] scaffold0051 (1 HSPs)
scaffold0051 (25-232)||(59019-59229)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 18996798 - 18996576
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttc 109  Q
    ||||||| ||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| | ||||||        |||||| ||||||||||||    
T  18996798 attattcccatgaatttattcccatgtaaagggatggaaatgtgcattcccatgatattatgcataaatttttaaaaaaaattgtaacttccaatttttc 18996699  T
Q  110 cagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatt 209  Q
    ||| ||| |||||||||||  |||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  18996698 caggaatgtcaagttatttaccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgttattcctaggaataatt 18996599  T
Q  210 tgtgtttcccaaaaacaaacgcc 232  Q
    |||||||||||||||||||||||    
T  18996598 tgtgtttcccaaaaacaaacgcc 18996576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 18999337 - 18999115
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttc 109  Q
    ||||||| ||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| | ||||||        |||||| ||||||||||||    
T  18999337 attattcccatgaatttattcccatgtaaagggatggaaatgtgcattcccatgatattatgcataaatttttaaaaaaaattgtaacttccaatttttc 18999238  T
Q  110 cagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatt 209  Q
    ||| ||| |||||||||||  |||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  18999237 caggaatgtcaagttatttaccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgttattcctaggaataatt 18999138  T
Q  210 tgtgtttcccaaaaacaaacgcc 232  Q
    |||||||||||||||||||||||    
T  18999137 tgtgtttcccaaaaacaaacgcc 18999115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 11685726 - 11685948
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaattttt 108  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||          |||||| |||||||||||    
T  11685726 attattcccatgaatttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaattgtaacttccaattttt 11685825  T
Q  109 ccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataat 208  Q
     ||| ||| |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||    
T  11685826 acaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgttattcctatgaataat 11685925  T
Q  209 ttgtgtttcccaaaaacaaacgc 231  Q
    |||||||||||||||||||||||    
T  11685926 ttgtgtttcccaaaaacaaacgc 11685948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 8082326 - 8082549
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaattttt 108  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||           |||||| |||||||||||    
T  8082326 attattcccatgaatatattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattgtaacttccaattttt 8082425  T
Q  109 ccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataat 208  Q
    |||| ||| |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | |||||||||||||| | ||||||    
T  8082426 ccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataat 8082525  T
Q  209 ttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||||||||||||||||||    
T  8082526 ttgtgtttcccaaaaacaaacgcc 8082549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 28246856 - 28247071
Alignment:
Q  18 catgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaatttttccagaaat 116  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||         |||||| ||||||||||||||  |||    
T  28246856 catgaatttattcccatataaagatatgagaatgtgcattcccatgatattatgcatagatttttaaaaaaaaattgtaacttccaatttttccacgaat 28246955  T
Q  117 atcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgttt 216  Q
     |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||| |||    
T  28246956 gtcaagttatttgacaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtattt 28247055  T
Q  217 cccaaaaacaaacgcc 232  Q
    ||||||||||||||||    
T  28247056 cccaaaaacaaacgcc 28247071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 45572883 - 45572660
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaattttt 108  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||           |||||| |||||||||||    
T  45572883 attattctcatgaatatattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattgtaacttccaattttt 45572784  T
Q  109 ccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataat 208  Q
    |||| ||| |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | |||||||||||||    ||||||    
T  45572783 ccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcccgagaataat 45572684  T
Q  209 ttgtgtttcccaaaaacaaacgcc 232  Q
    || |||||||||||||||||||||    
T  45572683 ttatgtttcccaaaaacaaacgcc 45572660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 41958203 - 41957979
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn--ttgtaatttccaatttt 107  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||            | |||| ||||||||||    
T  41958203 attattcccatgaatatattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaatcgtaacttccaatttt 41958104  T
Q  108 tccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataa 207  Q
    | ||| ||| |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | ||||||||||||||  ||||||    
T  41958103 ttcaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgaaaataa 41958004  T
Q  208 tttgtgtttcccaaaaacaaacgcc 232  Q
    |||||||||||||||||||||||||    
T  41958003 tttgtgtttcccaaaaacaaacgcc 41957979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 24373279 - 24373072
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaatttttccagaaatatcaagt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||           |||||| ||||||||||||||| ||| ||||||    
T  24373279 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattgtaacttccaatttttccaggaatgtcaagt 24373180  T
Q  124 tatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaa 223  Q
    |||||| |||||||       |||||||||||||||||||||||||||||||||||||| | | |||||||||||| | |||||||||||||||||||||    
T  24373179 tatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattc-ccgatatgttattcctgggaataatttgtgtttcccaaaa 24373081  T
Q  224 acaaacgcc 232  Q
    |||||||||    
T  24373080 acaaacgcc 24373072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 37609077 - 37609301
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn--ttgtaatttccaatttt 107  Q
    ||||||| ||| || |||||||||||||||||||||||||||| ||||  |||||||||||||| ||||||||          |||||| ||||||||||    
T  37609077 attattcccataaacttattcccatgtaaagagatgagaatgtacattatcatgatattatgcatagatttttaaaaaaaaaattgtaacttccaatttt 37609176  T
Q  108 tccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataa 207  Q
    || || ||| |||||||||||| |||||||       ||||||||||||||||||||||||||||||||||| || | |||||||||||||| | |||||    
T  37609177 tctaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcactcccgggtatgttattcctgggaataa 37609276  T
Q  208 tttgtgtttcccaaaaacaaacgcc 232  Q
    |||||||||||||||||||||||||    
T  37609277 tttgtgtttcccaaaaacaaacgcc 37609301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 53151517 - 53151739
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagattt-----ttnnnnnnnnttgtaatttccaat 104  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||                ||||| |||||||    
T  53151517 attattcccatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaaaaaatgtaacttccaat 53151616  T
Q  105 ttttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaa 204  Q
    |||||||| ||| |||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||| | |||||||||||||| | ||    
T  53151617 ttttccaggaatgtcaagttatttgccaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaa 53151716  T
Q  205 taatttgtgtttcccaaaaacaaac 229  Q
    |||  ||||||||||||||||||||    
T  53151717 taa--tgtgtttcccaaaaacaaac 53151739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 30801002 - 30801210
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnt-tgtaatttccaatttttccagaaatatcaagt 123  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||            ||||| ||||||||||||||| ||| ||||||    
T  30801002 ttatttccatgtaaagagatgggaatatgcattcccatgatattatgcatagatttaaaaaaaaaaaatgtaacttccaatttttccaggaatgtcaagt 30801101  T
Q  124 tatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaa 223  Q
    |||||| |||||||       |||||||||||||||||||||||||||||||||||||| | ||||||||||||||   |||||||||||||||||||||    
T  30801102 tatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgagaataatttgtgtttcccaaaa 30801201  T
Q  224 acaaacgcc 232  Q
    |||||||||    
T  30801202 acaaacgcc 30801210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 13696641 - 13696872
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn---------ttgtaatttc 100  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||                   |||||| |||    
T  13696641 attattcccatgaacttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaaaaaaaaattgtaacttc 13696740  T
Q  101 caatttttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattccta 200  Q
    |||||||| ||| ||| |||||||||||| |||||||       ||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||     
T  13696741 caattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatactcaataatcaaattttcatattttcattctcgggtatgttattcctg 13696840  T
Q  201 gaaataatttgtgtttcccaaaaacaaacgcc 232  Q
    | ||||||||||||||||||||||||||||||    
T  13696841 ggaataatttgtgtttcccaaaaacaaacgcc 13696872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 3777483 - 3777296
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaattttt 108  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||          |||||| |||||||||||    
T  3777483 attattcccatgaatttattcccatgtaaagagatggaaatgtgcattcccatgatattatgcatagattttaaaaaaaaaattgtaacttccaattttt 3777384  T
Q  109 ccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttatt 196  Q
    |||| ||| ||||||||| || |||||||       |||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  3777383 ccaggaatgtcaagttatctgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcggatatgttatt 3777296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 91 - 232
Target Start/End: Complemental strand, 30260797 - 30260656
Alignment:
Q  91 ttgtaatttccaatttttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtat 190  Q
    |||||| ||||||||||||||| ||| |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | |  ||    
T  30260797 ttgtaacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccggaaat 30260698  T
Q  191 gttattcctagaaataatttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||   |||||||||||||||||||||||||||||||    
T  30260697 gttattccagaaaataatttgtgtttcccaaaaacaaacgcc 30260656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 20307461 - 20307321
Alignment:
Q  93 gtaatttccaatttttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgt 192  Q
    |||| ||||| ||||||||  ||| | |||||||||| |||||||       ||||||||||||| ||||||||||| ||| |||||||||| | |||||    
T  20307461 gtaacttccagtttttccaagaatgttaagttatttgccaaacacttattttaacaaatacccaataatcaaatttttataatttcattctcggatatgt 20307362  T
Q  193 tattcctagaaataatttgtgtttcccaaaaacaaacgcct 233  Q
    |||||||  |||||||||||||||| | |||||||||||||    
T  20307361 tattcctgaaaataatttgtgtttctccaaaacaaacgcct 20307321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 20307521 - 20307463
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatatt 68  Q
    |||||||  |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  20307521 attattcctatgaatttattctcatgtaaagagatgagaatgtgcattcccataatatt 20307463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 48332116 - 48332167
Alignment:
Q  148 aaatacccaagaatcaaattttcatattttcattctcaggtatgttattcct 199  Q
    ||||| ||||||||||||||||||||||| ||||||  |||| |||||||||    
T  48332116 aaatatccaagaatcaaattttcatatttacattcttgggtaagttattcct 48332167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 30260862 - 30260816
Alignment:
Q  91 ttgtaatttccaatttttccagaaatatcaagttatttgtcaaacac 137  Q
    |||||| ||||||||||||||| ||| |||||||||||| |||||||    
T  30260862 ttgtaacttccaatttttccaggaatgtcaagttatttgccaaacac 30260816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 4653800 - 4653578
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttc 109  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||         |||||| |||||||||||     
T  4653800 attattcccatgaacttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaattgtaacttccaatttttt 4653701  T
Q  110 cagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatt 209  Q
    ||| ||| |||||||||||| |||||||       |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||    
T  4653700 caggaatgtcaagttatttgccaaacactttttttaacaaatacctaagaatcaaattttcatattttcattctcgggtatgttattcctgggaataatt 4653601  T
Q  210 tgtgtttcccaaaaacaaacgcc 232  Q
    |||||||||||||||||||||||    
T  4653600 tgtgtttcccaaaaacaaacgcc 4653578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 33756603 - 33756400
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttccagaaatatcaagtt 124  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||||| | ||||           ||||| |||||||||||  || ||| |||||||    
T  33756603 ttattctcatgtaaa-agatgggaatgtgcattcccatgatattatgcatatattt--aaaaaaaaatgtaacttccaatttttttaggaatgtcaagtt 33756507  T
Q  125 atttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaaa 224  Q
    ||||| |||| ||       ||||||||||| |||||||||||||||||||||||||| | | |||||||||||| ||||||||||||||||||||||||    
T  33756506 atttgccaaatactttttttaacaaatacccgagaatcaaattttcatattttcattcccggatatgttattcctggaaataatttgtgtttcccaaaaa 33756407  T
Q  225 caaacgc 231  Q
    |||||||    
T  33756406 caaacgc 33756400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 24765428 - 24765199
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnt--tgtaatttccaatttt 107  Q
    ||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||            ||||| || |||||||    
T  24765428 attattcccatgaacttattcccatgtaaagagatgggaatgtgcattcccatgatattttgcatagattttaaaaaagaaaactgtaactttcaatttt 24765329  T
Q  108 tccagaaatatcaagttatttgtcaaa-----cacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctaga 202  Q
     |||  ||| |||||||||| | ||||     |||       |||||||| ||| ||||||||||||||||||||||||| |  |||| |||||||| |     
T  24765328 cccatgaatgtcaagttattcgccaaattaaacactttttttaacaaatatccaggaatcaaattttcatattttcattcccgagtatattattcctggg 24765229  T
Q  203 aataatttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||||||||||| ||||||||||||    
T  24765228 aataatttgtgtttccccaaaacaaacgcc 24765199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 15805736 - 15805958
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttc 109  Q
    ||||||| ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||          |||||| ||||||||||||    
T  15805736 attattcccatgaatatattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattgtaacttccaatttttc 15805835  T
Q  110 cagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatt 209  Q
    ||||||| ||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||| | |||||||||||||| | |||||||    
T  15805836 cagaaatgtcaagttatttgtcaaacactttttttaacaaatacccaagaatcaaattttaatattttcattcccgggtatgttattcctgggaataatt 15805935  T
Q  210 tgtgtttcccaaaaacaaacgcc 232  Q
    |||||||||||||||||||||||    
T  15805936 tgtgtttcccaaaaacaaacgcc 15805958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 30518677 - 30518452
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn---ttgtaatttccaattt 106  Q
    ||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||||||           |||||| |||||||||    
T  30518677 attattcccatgaatttattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatatattttttaaaaaaaaaattgtaacttccaattt 30518578  T
Q  107 ttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaata 206  Q
    |||||| ||| |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | |||||||||||| | | ||||    
T  30518577 ttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcatgggaata 30518478  T
Q  207 atttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||||||||||||||||||||    
T  30518477 atttgtgtttcccaaaaacaaacgcc 30518452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 27641243 - 27641025
Alignment:
Q  18 catgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn----ttgtaatttccaatttttccaga 113  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||              |||||| || ||||||||||||     
T  27641243 catgaatttattctcatgtaaagagatgagaatgtgcattcccatgatattatgcatagatttaaaaaaaataaaaattgtaactttcaatttttccagg 27641144  T
Q  114 aatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtg 213  Q
    |||  ||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| |  ||||||||||||| | |||||||| ||    
T  27641143 aatgccaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctgggaataatttttg 27641044  T
Q  214 tttcccaaaaacaaacgcc 232  Q
    |||||||||||||||||||    
T  27641043 tttcccaaaaacaaacgcc 27641025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 5614519 - 5614742
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaattttt 108  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||           |||||| || ||||||||    
T  5614519 attattcccatgaatttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattgtaactttcaattttt 5614618  T
Q  109 ccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataat 208  Q
    |||  ||| |||||||||||| |||||||       |||||||| |||||||||||||||| |||||||||||| |  |||| |||||||| | |||| |    
T  5614619 ccaagaatgtcaagttatttgccaaacactttttttaacaaatatccaagaatcaaatttttatattttcattcccgagtatattattcctgggaatagt 5614718  T
Q  209 ttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||||||||||||||||||    
T  5614719 ttgtgtttcccaaaaacaaacgcc 5614742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 32597581 - 32597356
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn---ttgtaatttccaattt 106  Q
    ||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||            |||||| |||||||||    
T  32597581 attattcccatgaatttattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaataaaaaaattgtaacttccaattt 32597482  T
Q  107 ttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaata 206  Q
    |||||| ||| ||||||||||||  |||||        |||||||||||||||||||||||||||||||||||||| | | ||| ||||| ||   ||||    
T  32597481 ttccaggaatgtcaagttatttgctaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccggatatattatttctgagaata 32597382  T
Q  207 atttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||||||||||||||||||||    
T  32597381 atttgtgtttcccaaaaacaaacgcc 32597356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 56080824 - 56080602
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttc 109  Q
    ||||||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||| ||||||          |||||| ||||||||||||    
T  56080824 attattcccatgaatttattctcatgttaagaggtgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattgtaacttccaatttttc 56080725  T
Q  110 cagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatt 209  Q
    ||| ||| ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||    
T  56080724 caggaatgtcaagttatttgtcaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgttattcctgggaataatt 56080625  T
Q  210 tgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||||||||| |||||||    
T  56080624 tgtgtttcccaaaaataaacgcc 56080602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 39502817 - 39502596
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn--ttgtaatttccaatttt 107  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||           |||||| ||||||||||    
T  39502817 attattcccatgaatttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaaattgtaacttccaatttt 39502718  T
Q  108 tccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataa 207  Q
    | ||| ||| |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | ||||||||||||||  ||||||    
T  39502717 ttcaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgaaaataa 39502618  T
Q  208 tttgtgtttcccaaaaacaaac 229  Q
    ||||||||||||||||| ||||    
T  39502617 tttgtgtttcccaaaaataaac 39502596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 40591042 - 40591264
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttc 109  Q
    ||||||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||| ||||||          |||||| ||||||||||||    
T  40591042 attattcccatgaatttattctcatgttaagaggtgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattgtaacttccaatttttc 40591141  T
Q  110 cagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatt 209  Q
    ||| ||| |||| ||||||| |||||||       || ||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||    
T  40591142 caggaatgtcaaattatttgccaaacactttttttaataaatacccaagaatcaaattttcatattttcattctcgggtatgttattcctgggaataatt 40591241  T
Q  210 tgtgtttcccaaaaacaaacgcc 232  Q
    |||||||||||||||||||||||    
T  40591242 tgtgtttcccaaaaacaaacgcc 40591264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 44506342 - 44506120
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttc 109  Q
    ||||||| ||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||          ||||||||||||||||||     
T  44506342 attattcccataaatatattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattgtaatttccaatttttt 44506243  T
Q  110 cagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatt 209  Q
    ||| ||| | |||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||    
T  44506242 caggaatgttaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccagatatgttattcctggaaataatt 44506143  T
Q  210 tgtgtttcccaaaaacaaacgcc 232  Q
    ||||||| |||||||||||||||    
T  44506142 tgtgttttccaaaaacaaacgcc 44506120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 26696052 - 26695830
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn--ttgtaatttccaatttt 107  Q
    ||||||| ||| || ||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||          |||||| ||||||||||    
T  26696052 attattcccataaacttattcccatgtaaagagatgggaatgtacattcccatgatattatgcatagattttttttaaaaaaattgtaacttccaatttt 26695953  T
Q  108 tccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataa 207  Q
    || || ||| |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||    
T  26695952 tctaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataa 26695853  T
Q  208 tttgtgtttcccaaaaacaaacg 230  Q
    |||||||||||||||||||||||    
T  26695852 tttgtgtttcccaaaaacaaacg 26695830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 24072601 - 24072392
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn--ttgtaatttccaatttttccagaaatatcaag 122  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||            |||||| ||||||||||||||| ||| |||||    
T  24072601 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaattgtaacttccaatttttccaggaatgtcaag 24072502  T
Q  123 ttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaa 222  Q
    ||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| |||||||||||||||    
T  24072501 ttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctggaaatagtttgtgtttcccaaa 24072402  T
Q  223 aacaaacgcc 232  Q
    ||||||||||    
T  24072401 aacaaacgcc 24072392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 9033941 - 9034165
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaattttt 108  Q
    ||||||| ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||           |||||| |||||||||||    
T  9033941 attattcccatgaatatattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattgtaacttccaattttt 9034040  T
Q  109 ccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcagg-tatgttattcctagaaataa 207  Q
    |||| ||| ||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||| | || |||||||||||| | |||||    
T  9034041 ccaggaatgtcaagttatttgtcaaacactttttttaacaaatacccaagaatcaaattttaatattttcattcccggggtatgttattcctgggaataa 9034140  T
Q  208 tttgtgtttcccaaaaacaaacgcc 232  Q
    |||||||||||||||||||||||||    
T  9034141 tttgtgtttcccaaaaacaaacgcc 9034165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 29051938 - 29052165
Alignment:
Q  10 attattctcatgaattt-attcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn----ttgtaatttccaat 104  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||              | |||| |||||||    
T  29051938 attattcccatgaattttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaaattagtaacttccaat 29052037  T
Q  105 ttttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaa 204  Q
    |||||||| ||| |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | || |||||||||||   ||    
T  29052038 ttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggcatgttattcctgagaa 29052137  T
Q  205 taatttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||||||||||||||||||||||    
T  29052138 taatttgtgtttcccaaaaacaaacgcc 29052165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 39499462 - 39499257
Alignment:
Q  26 tattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn--ttgtaatttccaatttttccagaaatatcaagt 123  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||            |||||| ||||||||||| ||| ||| ||||||    
T  39499462 tattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaattgtaacttccaattttttcaggaatgtcaagt 39499363  T
Q  124 tatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaa 223  Q
    |||||| |||||||       |||||||||||||||||||||||||||||||||||||| | ||||||||||||||  ||||||||||||||||||||||    
T  39499362 tatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgaaaataatttgtgtttcccaaaa 39499263  T
Q  224 acaaac 229  Q
    | ||||    
T  39499262 ataaac 39499257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 37995676 - 37995456
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttc 109  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |          ||||| || |||||||||    
T  37995676 attattcctatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatacatatattctaaaaaaaaaatgtaactttcaatttttc 37995577  T
Q  110 cagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatt 209  Q
    |||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||| | | ||  ||||||||   | |||||    
T  37995576 cagaaatatcaagttatttgccaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccggataaattattcctgagattaatt 37995477  T
Q  210 tgtgtttcccaaaaacaaacg 230  Q
    |||||||||||||||||||||    
T  37995476 tgtgtttcccaaaaacaaacg 37995456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 91 - 232
Target Start/End: Original strand, 2623309 - 2623450
Alignment:
Q  91 ttgtaatttccaatttttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtat 190  Q
    |||||| ||||||||||| ||| ||| |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | |||||    
T  2623309 ttgtaacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtat 2623408  T
Q  191 gttattcctagaaataatttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  2623409 gttattcctaggaataatttgtgtttcccaaaaacaaacgcc 2623450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 233 - 324
Target Start/End: Original strand, 53716432 - 53716523
Alignment:
Q  233 ttaatgttttgttcgggacgttttcgtcataattttttcactggatttagcactcctctttaatcattgtattcactgttaagggtattttg 324  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  53716432 ttaatgttttgttcgggacgttttcgtcataattttttcgctggattaaacactcctctttaatcattgtattcactgttaagggtattttg 53716523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 127938 - 128142
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttccagaaatatcaagtt 124  Q
    ||||||||||||||||||||| |||||| ||||||||| |||||||||| ||||||          |||||| ||  |||||||| || ||| |||||||    
T  127938 ttattcccatgtaaagagatgggaatgtacattcccataatattatgcatagattta-aaaaaaaattgtaacttttaatttttcaaggaatgtcaagtt 128036  T
Q  125 atttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaaa 224  Q
    |||||  ||||||       ||||||||  |||||||||||||||||||||||||||| | ||||||||||||||   |||||||||||||||| |||||    
T  128037 atttgcaaaacacatcttttaacaaatattcaagaatcaaattttcatattttcattcccgggtatgttattcctgagaataatttgtgtttcctaaaaa 128136  T
Q  225 caaacg 230  Q
    ||||||    
T  128137 caaacg 128142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 91 - 232
Target Start/End: Original strand, 45620392 - 45620532
Alignment:
Q  91 ttgtaatttccaatttttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtat 190  Q
    |||||| |||||||||| |||| ||| |||||||||||| |||||||       | |||||||||| ||||||||||||| ||||||||||| |  ||||    
T  45620392 ttgtaacttccaattttcccaggaatgtcaagttatttg-caaacactttttttagcaaatacccaggaatcaaattttcgtattttcattcccgtgtat 45620490  T
Q  191 gttattcctagaaataatttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||| |||||||||||||| |||  ||||||||||||    
T  45620491 gttattcctggaaataatttgtgtatcctcaaaacaaacgcc 45620532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 51790234 - 51790319
Alignment:
Q  148 aaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaaacaaacgcct 233  Q
    |||||| || ||||||||||||||||||||||||| || ||||||||||| | | ||||||||||||||||| |||||||||||||    
T  51790234 aaatactcatgaatcaaattttcatattttcattcccatgtatgttattcatgggaataatttgtgtttccccaaaacaaacgcct 51790319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 31335035 - 31335105
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagattt 80  Q
    ||||||| ||||||||||||| ||| ||||||||||  |||||||||||||||||||||||||| ||||||    
T  31335035 attattcccatgaatttattctcatataaagagatggaaatgtgcattcccatgatattatgcatagattt 31335105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 45620308 - 45620365
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatatt 68  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  45620308 attattcccatgaatttattcccaa-taaagagatgagaatgtgcatttccatgatatt 45620365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 51790093 - 51790151
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatatt 68  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||||||||||||| ||||||    
T  51790093 attattcccatgaatttattctcatgtaaagaggtgaaaatgtgcattcccacgatatt 51790151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 30586271 - 30586064
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttccagaaatatcaagtt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||          |||||| ||||||||||| ||| ||| |||||||    
T  30586271 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattgtaacttccaattttttcaggaatgtcaagtt 30586172  T
Q  125 atttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaaa 224  Q
    ||||| |||||||       ||||||||| |||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||    
T  30586171 atttgccaaacactttttttaacaaatactcaagaatcaaattttcatattttcattcccgggtatgttattcctggaaataatttgtgtttcccaaaaa 30586072  T
Q  225 caaacgcc 232  Q
    ||||||||    
T  30586071 caaacgcc 30586064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 20372421 - 20372647
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn----ttgtaatttccaatt 105  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||              |||||| ||||||||    
T  20372421 attattcccatgaatttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaaaattgtaacttccaatt 20372520  T
Q  106 tttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaat 205  Q
    ||||||| ||| |||||||||||| |||||||       ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | |||    
T  20372521 tttccaggaatgtcaagttatttgccaaacactttttttaacaaatacacaagaatcaaattttcatattttcattctcgggtatgttattcctgggaat 20372620  T
Q  206 aatttgtgtttcccaaaaacaaacgcc 232  Q
    |||||||||||||||||||||||||||    
T  20372621 aatttgtgtttcccaaaaacaaacgcc 20372647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 31293234 - 31293026
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaatttttccagaaatatcaagt 123  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||         |||||| ||||||||||| | | ||| ||||||    
T  31293234 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttttaaaaaaaaattgtaacttccaattttttcgggaatgtcaagt 31293135  T
Q  124 tatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaa 223  Q
    |||||| |||||||       |||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||||||    
T  31293134 tatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaaa 31293035  T
Q  224 acaaacgcc 232  Q
    |||||||||    
T  31293034 acaaacgcc 31293026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 47266475 - 47266253
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaattttt 108  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||          |||||| |||||||||||    
T  47266475 attattcccatgaatttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaattgtaacttccaattttt 47266376  T
Q  109 --ccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaata 206  Q
      |||| ||| |||||||||||  |||||||       |||||||||||||||||||||||||||||||||||||| | | ||||||||||||   ||||    
T  47266375 ttccaggaatgtcaagttattttccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccggatatgttattcctgagaata 47266276  T
Q  207 atttgtgtttcccaaaaacaaac 229  Q
    |||||||||||||||||||||||    
T  47266275 atttgtgtttcccaaaaacaaac 47266253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 41743349 - 41743126
Alignment:
Q  10 attattctcatgaatttattcccatgta--aagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttt 107  Q
    |||||||  |||||||||||| ||| ||  |||||||| ||||||||||||||||||||||||||| ||||||          |||||| ||||||||||    
T  41743349 attattcctatgaatttattcacatatataaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattgtaacttccaatttt 41743250  T
Q  108 tccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataa 207  Q
    | ||| ||| |||||||||||| |||||||       |||||||| ||||||||||||||||||||||||||||  | |||||||||||||| |||||||    
T  41743249 ttcaggaatgtcaagttatttgccaaacactttttttaacaaatatccaagaatcaaattttcatattttcatttccgggtatgttattcctggaaataa 41743150  T
Q  208 tttgtgtttcccaaaaacaaacgc 231  Q
    ||||||||||||||||||||||||    
T  41743149 tttgtgtttcccaaaaacaaacgc 41743126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 44080063 - 44079874
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttc 109  Q
    ||||||| ||| |||||||| ||||||||||||| | ||||||||||||||||||||||| ||| ||||||          |||||| ||||||||||||    
T  44080063 attattcccataaatttatttccatgtaaagagacgggaatgtgcattcccatgatattacgcatagatttaaaaaaaaaattgtaacttccaatttttc 44079964  T
Q  110 cagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcct 199  Q
    ||| ||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  44079963 cagtaatatcaagttatttgtcaaacactttttttaacaaatacctaagaatcaaattttcatattttcattctcgggtatgttattcct 44079874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 92 - 232
Target Start/End: Original strand, 49142011 - 49142151
Alignment:
Q  92 tgtaatttccaatttttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatg 191  Q
    ||||| ||||||||||| ||| ||| |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | ||||||    
T  49142011 tgtaacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatg 49142110  T
Q  192 ttattcctagaaataatttgtgtttcccaaaaacaaacgcc 232  Q
    |||||||| | ||||||| ||||||||||||||||||||||    
T  49142111 ttattcctgggaataattagtgtttcccaaaaacaaacgcc 49142151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 32031451 - 32031364
Alignment:
Q  145 aacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaaacaaacgcc 232  Q
    |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||||||||||||||||||||||    
T  32031451 aacaaatatccaagaatcaaattttcatattttcattcccagatatgttattcctaagaataatttgtgtttcccaaaaacaaacgcc 32031364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 223
Target Start/End: Complemental strand, 31577533 - 31577403
Alignment:
Q  92 tgtaatttccaatttttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatg 191  Q
    ||||| ||||||| ||||||| ||| ||||||||||||  ||||||       ||||||||||||||||||||||||| |||||||||||  |  |||||    
T  31577533 tgtaacttccaatatttccaggaatgtcaagttatttgctaaacactttttttaacaaatacccaagaatcaaatttttatattttcatttccgagtatg 31577434  T
Q  192 ttattcctagaaataatttgtgtttcccaaaa 223  Q
    |||||||| || |||||||||||| |||||||    
T  31577433 ttattcct-gagataatttgtgttccccaaaa 31577403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 22916661 - 22916883
Alignment:
Q  11 ttattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagattt-ttnnnnnnnnttgtaatttccaatttttc 109  Q
    |||||| |||||||| ||||||||||||| || || |||||||||||||||||||||| |||| ||||||           |||||| || |||||||||    
T  22916661 ttattcccatgaattgattcccatgtaaaaagttgggaatgtgcattcccatgatattctgcatagatttaaaaaaaaaaattgtaactttcaatttttc 22916760  T
Q  110 cagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatt 209  Q
    ||  ||| ||||||||||||  |||||        ||||||||| || |||||||| |||||||||||||| | ||| ||| ||||||| |  |||||||    
T  22916761 caagaatgtcaagttatttgctaaacattttttttaacaaatactcaggaatcaaaatttcatattttcatccccagatatattattccaatgaataatt 22916860  T
Q  210 tgtgtttcccaaaaacaaacgcc 232  Q
    ||||||| || ||||||| ||||    
T  22916861 tgtgttttcccaaaacaagcgcc 22916883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 27620193 - 27620267
Alignment:
Q  158 gaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||||||||||||||||||  ||| |||| |||||||   ||||||||||||||||| ||||||||||||    
T  27620193 gaatcaaattttcatattttcatttccagatatgctattcctgtgaataatttgtgtttccctaaaacaaacgcc 27620267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 49141941 - 49141996
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagattt 80  Q
    |||||| |||||||||||||| ||||||  ||||||||||||||||||| ||||||    
T  49141941 ttattctcatgtaaagagatgggaatgtatattcccatgatattatgcatagattt 49141996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 2659723 - 2659790
Alignment:
Q  148 aaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgttt 216  Q
    |||||| || ||||||||||| ||||||||||||||   ||| |||||||||| |||||||||||||||    
T  2659723 aaatacacaggaatcaaattt-catattttcattcttgagtaagttattcctaaaaataatttgtgttt 2659790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 31577609 - 31577553
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttt 81  Q
    ||||||||| | |||||| || ||||||||||||||||||||||||||| | |||||    
T  31577609 ttattcccaagaaaagaggtgggaatgtgcattcccatgatattatgcatatatttt 31577553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 43175047 - 43174979
Alignment:
Q  12 tattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagattt 80  Q
    ||||| ||| ||||| |||| || |||||||||| ||||||||||| |||||||||| |||| ||||||    
T  43175047 tattcccattaattttttcctatataaagagatgggaatgtgcatttccatgatattctgcatagattt 43174979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 38526708 - 38526487
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttc 109  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||         |||||| |||||||||||     
T  38526708 attattcccatgaatttattctcatgtaaagagatgagaatgtgcattcccatgatattatgcatagatttt-aaaaaaaattgtaacttccaatttttt 38526610  T
Q  110 cagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatt 209  Q
    ||| ||| |||||||||||| |||||||       ||||||||| |||||||||||||||||||||||||||| | |||||||||||||| | |||||||    
T  38526609 caggaatgtcaagttatttgccaaacactttttttaacaaatactcaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatt 38526510  T
Q  210 tgtgtttcccaaaaacaaacgcc 232  Q
    | |||||||||||||||||||||    
T  38526509 tatgtttcccaaaaacaaacgcc 38526487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 35563729 - 35563936
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttccagaaatatcaagtt 124  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||          |||||| ||||||||||||||| ||| |||||||    
T  35563729 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattgtaacttccaatttttccaggaatgtcaagtt 35563828  T
Q  125 atttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaaa 224  Q
    ||||| |||||||       |||||||||||||||||||||||||||||||||||||| | | |||||||||||  ||||||||||||||||||||||||    
T  35563829 atttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccggatatgttattcccggaaataatttgtgtttcccaaaaa 35563928  T
Q  225 caaacgcc 232  Q
    ||||||||    
T  35563929 caaacgcc 35563936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 18916125 - 18916351
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn----ttgtaatttccaatt 105  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||              |||||| ||||||||    
T  18916125 attattcccatgaatttattcccatgtaaagagatgggaatgtgcattcccatgatattatacatagatttaaaaaaaataaaaattgtaacttccaatt 18916224  T
Q  106 tttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaat 205  Q
    ||||||| ||| |||| ||||||| |||||||       |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||    
T  18916225 tttccaggaatgtcaaattatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccaggtatgttattcctcggaat 18916324  T
Q  206 aatttgtgtttcccaaaaacaaacgcc 232  Q
    |||||||||||||||||||||||||||    
T  18916325 aatttgtgtttcccaaaaacaaacgcc 18916351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 2735061 - 2734852
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn--ttgtaatttccaatttttccagaaatatcaag 122  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||           |||||| ||||||||||||||| ||| |||||    
T  2735061 ttattcgcatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaaattgtaacttccaatttttccaggaatgtcaag 2734962  T
Q  123 ttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaa 222  Q
    ||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||| |||||||||||||||    
T  2734961 ttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaatagtttgtgtttcccaaa 2734862  T
Q  223 aacaaacgcc 232  Q
    ||||||||||    
T  2734861 aacaaacgcc 2734852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 38567513 - 38567721
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaatttttccagaaatatcaagt 123  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||           |||||| ||||||||||||||  ||| ||||||    
T  38567513 ttattcccatgtaaagagatggggatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattgtaacttccaatttttccaagaatgtcaagt 38567612  T
Q  124 tatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaa 223  Q
    |||||| |||||||       |||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||||||    
T  38567613 tatttgccaaacacttttttgaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaaa 38567712  T
Q  224 acaaacgcc 232  Q
    |||||||||    
T  38567713 acaaacgcc 38567721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 41486695 - 41486472
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaattttt 108  Q
    ||||||| ||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| |||||||          |||||| ||||||||| |    
T  41486695 attattcccatgaatttattctcatgtaaagatatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaattgtaacttccaatttat 41486596  T
Q  109 ccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataat 208  Q
    |||| ||| |||||||||||| |||||||       |||||||| |||||||||||||||||||||||||| || | | |||||||||||| | ||||||    
T  41486595 ccaggaatgtcaagttatttgccaaacactttttttaacaaatatccaagaatcaaattttcatattttcagtcccggatatgttattcctgggaataat 41486496  T
Q  209 ttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||||||||||||||||||    
T  41486495 ttgtgtttcccaaaaacaaacgcc 41486472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 91 - 232
Target Start/End: Complemental strand, 9686509 - 9686368
Alignment:
Q  91 ttgtaatttccaatttttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtat 190  Q
    |||||| ||||||||||||||| ||| |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | |||||    
T  9686509 ttgtaacttccaatttttccaggaatgtcaagttatttgacaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtat 9686410  T
Q  191 gttattcctagaaataatttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  9686409 gttattcctgggaataatttgtgtttcccaaaaacaaacgcc 9686368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 1197540 - 1197758
Alignment:
Q  18 catgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagattt----ttnnnnnnnnttgtaatttccaatttttccaga 113  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||    |         |||||| ||||||||||| | |     
T  1197540 catgaatttattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaataaaataaaattgtaacttccaattttttctgg 1197639  T
Q  114 aatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtg 213  Q
    ||| |||||||||||| |||||||       |||||||||||| ||||||||||||||||||||||||| | | ||||||||||||   |||||||||||    
T  1197640 aatgtcaagttatttgccaaacactttttttaacaaatacccaggaatcaaattttcatattttcattcccggatatgttattcctgagaataatttgtg 1197739  T
Q  214 tttcccaaaaacaaacgcc 232  Q
    ||||||||||||| |||||    
T  1197740 tttcccaaaaacacacgcc 1197758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 24697756 - 24697549
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttccagaaatatcaagtt 124  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||| |||||           || ||| |||||||||| |||| ||| |||||||    
T  24697756 ttattcccatgtaaagagatgtgaatgtgcattcccatgatattctgcatagatt------aaaaattataacttccaattttcccaggaatgtcaagtt 24697663  T
Q  125 atttgtcaaacacnnnnnnn------aacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcc 218  Q
    ||||  |||||||             |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| |||||||| |||||||    
T  24697662 attttccaaacactttttttttttttaacaaatacccatgaatcaaattttcatattttcattcccatgtatgttattcctaggaataatttatgtttcc 24697563  T
Q  219 caaaaacaaacgcc 232  Q
    | ||||||||||||    
T  24697562 ccaaaacaaacgcc 24697549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 91 - 232
Target Start/End: Original strand, 11661332 - 11661473
Alignment:
Q  91 ttgtaatttccaatttttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtat 190  Q
    |||||| ||||||||||| ||  ||| |||||||||||| |||||||       |||||||||  ||||||||||||||||||||||||||| |  ||||    
T  11661332 ttgtaacttccaattttttcaagaatgtcaagttatttgccaaacactttttttaacaaatacttaagaatcaaattttcatattttcattcccgagtat 11661431  T
Q  191 gttattcctagaaataatttgtgtttcccaaaaacaaacgcc 232  Q
     |||||| | | ||||||||||||||||||||||||||||||    
T  11661432 cttattcttgggaataatttgtgtttcccaaaaacaaacgcc 11661473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 1996400 - 1996320
Alignment:
Q  152 acccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||||||||||||||||||||| ||| | | ||||||||||||   ||||||||||||||||||||||||||||||    
T  1996400 acccaagaatcaaattttcatattttcgttcccggatatgttattcctgagaataatttgtgtttcccaaaaacaaacgcc 1996320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 2001533 - 2001462
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttt 81  Q
    ||||||| ||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||||||    
T  2001533 attattcccataaatttattcccatgaaaagatatgagaatgtgcattctcatgatattatgcatagatttt 2001462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 43596322 - 43596252
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagattt 80  Q
    ||||||| ||||||||||||| | ||||||||| || |||||||||||||| | ||||| |||| ||||||    
T  43596322 attattcccatgaatttattctcgtgtaaagagttgggaatgtgcattcccgtaatattctgcatagattt 43596252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 43596024 - 43596081
Alignment:
Q  11 ttattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatatt 68  Q
    |||||||||| |||||||||||||||||  || |||||||||| ||| ||||||||||    
T  43596024 ttattctcataaatttattcccatgtaagaagttgagaatgtggatttccatgatatt 43596081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 43596165 - 43596095
Alignment:
Q  159 aatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaaacaaac 229  Q
    ||||||| ||||||||||||||| || | |||||| || ||   ||||||||||||||||| |||||||||    
T  43596165 aatcaaaatttcatattttcattttcggatatgttttttctgagaataatttgtgtttccccaaaacaaac 43596095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 5555420 - 5555198
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttc 109  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||         |||||| ||||||||||||    
T  5555420 attattcccatgaatttattcgcatgtaaagagatgagaatgtgcattcccatgatattatgcatagattttaaaaaaaaattgtaacttccaatttttc 5555321  T
Q  110 cagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatt 209  Q
    ||||||| |||||||||| | |||||||       |||||||| |||||||||||||||| |||||||||||| | ||||||||||| ||   |||||||    
T  5555320 cagaaatgtcaagttattcgccaaacactttttttaacaaatatccaagaatcaaatttttatattttcattcccgggtatgttatttctgagaataatt 5555221  T
Q  210 tgtgtttcccaaaaacaaacgcc 232  Q
    |||||||||||||||||||||||    
T  5555220 tgtgtttcccaaaaacaaacgcc 5555198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 45360390 - 45360175
Alignment:
Q  18 catgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaatttttccagaaat 116  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||           |||||| ||||||||||||||| |||    
T  45360390 catgaatatattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattgtaacttccaatttttccaggaat 45360291  T
Q  117 atcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgttt 216  Q
     |||||||||||| |||||||       ||||||||||||||||||||||||| ||||||||||||  ||||||||||||||| | ||||||||||||||    
T  45360290 gtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttgatattttcattccgaggtatgttattcctgggaataatttgtgttt 45360191  T
Q  217 cccaaaaacaaacgcc 232  Q
    ||||||||||||||||    
T  45360190 cccaaaaacaaacgcc 45360175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 43069011 - 43069215
Alignment:
Q  27 attcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttccagaaatatcaagttat 126  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||          |||||| ||||||||||| ||||||| |||| ||||    
T  43069011 attcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattgtaacttccaattttttcagaaatgtcaaattat 43069110  T
Q  127 ttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaaaca 226  Q
    ||| ||||||        |||||||||||||||||||||||||||||||||||||| |  ||||||||||||| | ||||||||||||||  ||||||||    
T  43069111 ttgccaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctgggaataatttgtgtttttcaaaaaca 43069210  T
Q  227 aacgc 231  Q
    |||||    
T  43069211 aacgc 43069215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 38 - 232
Target Start/End: Original strand, 32550356 - 32550549
Alignment:
Q  38 aagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttccagaaatatcaagttatttgtcaaacac 137  Q
    |||| ||| ||||||||||||||||||||||||||| ||||||||        |||||| ||||||||||||||| ||| |||||||||||| |||||||    
T  32550356 aagatatgggaatgtgcattcccatgatattatgcatagatttttaaaaaaa-ttgtaacttccaatttttccaggaatgtcaagttatttgccaaacac 32550454  T
Q  138 nnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaaacaaacgcc 232  Q
           |||||||||||||||||||||||||||||||||||||| |  |||||||||||||   ||| ||||||||||||||||||||||||||    
T  32550455 tttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctgtgaattatttgtgtttcccaaaaacaaacgcc 32550549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 19565392 - 19565168
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaattttt 108  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||           |||||| |||||||||||    
T  19565392 attattcccataaatttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcataaatttaaaaaaaaaaattgtaacttccaattttt 19565293  T
Q  109 ccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataa- 207  Q
    |||| ||| |||||||||||| |||||||       || ||||||||||||||||||||||||||||||||||  |   |||||||||| | | |||||     
T  19565292 ccaggaatgtcaagttatttgccaaacactttttttaagaaatacccaagaatcaaattttcatattttcatttccgaatatgttattcttgggaataat 19565193  T
Q  208 tttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||| |||||||||||||||    
T  19565192 tttgtgttttccaaaaacaaacgcc 19565168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 14236603 - 14236401
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttt---tnnnnnnnnttgtaatttccaatttttccagaaatatcaa 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||            |||||| ||||||||||||||| ||| ||||    
T  14236603 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaaaattgtaacttccaatttttccaggaatgtcaa 14236504  T
Q  122 gttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaa 221  Q
    |||||||| |||||||       ||||||||||||||||||||        |||||||||| | |||||||||||||| | |||||||||||||||||||    
T  14236503 gttatttgccaaacactttttttaacaaatacccaagaatcaa--------attttcattcccgggtatgttattcctgggaataatttgtgtttcccaa 14236412  T
Q  222 aaacaaacgcc 232  Q
    |||||||||||    
T  14236411 aaacaaacgcc 14236401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 21620267 - 21620060
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaattttt 108  Q
    ||||||| ||| || ||||||||||||||||||||| |||||| |||||||||||||||||| | |||||||          |||||| |||||||||||    
T  21620267 attattcccataaacttattcccatgtaaagagatgggaatgtacattcccatgatattatgtatagattttaaaaaaaaaattgtaacttccaattttt 21620168  T
Q  109 ccagaaatatcaagttatttgtcaaacacnnnnnnn-aacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataa 207  Q
    | || ||| ||||||||||||  ||||||        |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||    
T  21620167 ctaggaatgtcaagttatttgctaaacacctttttttaacaaatacccaagaatcaaattttcatattttcattcccaggtatgttattcctgggaataa 21620068  T
Q  208 tttgtgtt 215  Q
    ||||||||    
T  21620067 tttgtgtt 21620060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 40125639 - 40125432
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaattttt 108  Q
    ||||||| |||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| ||||||           |||||| |||||||||||    
T  40125639 attattcccatgaatttattcccatgtaaagatataggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattgtaacttccaattttt 40125540  T
Q  109 ccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataat 208  Q
    |||| ||| ||||||||| || |||||||       |||||||||||||||||||||||||||||||||||||| |  ||||||| ||||| | |||| |    
T  40125539 ccaggaatgtcaagttatatgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttgttcctgggaatagt 40125440  T
Q  209 ttgtgttt 216  Q
    ||||||||    
T  40125439 ttgtgttt 40125432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 4643797 - 4643592
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgca-aagatttttnnnnnnnnttgtaatttccaatttttccagaaatatcaagt 123  Q
    ||||||||||||||||||||| |||||||||||||||||||||| | || ||  |||||        |||||| ||||||||||   || ||| |||| |    
T  4643797 ttattcccatgtaaagagatgggaatgtgcattcccatgatattctacataatttttttaaaaaaaattgtaacttccaattttcttaggaatgtcaaat 4643698  T
Q  124 tatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaa 223  Q
    |||| | |||||||       |||||||||||| |||||||||||||||||||||||||   | |||||||||| | | |||||||||||||||||  ||    
T  4643697 tattcgccaaacactttttttaacaaatacccatgaatcaaattttcatattttcattcctggatatgttattcttgggaataatttgtgtttccccgaa 4643598  T
Q  224 acaaac 229  Q
    ||||||    
T  4643597 acaaac 4643592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 3656727 - 3656526
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagattt--ttnnnnnnnnttgtaatttccaatttttccagaaatatcaag 122  Q
    ||||||||||||| ||||||| |||| |||||||||||||||||||||| ||||||            |||||| || |||||||||||| ||| |||||    
T  3656727 ttattcccatgtacagagatgggaatatgcattcccatgatattatgcatagatttaaaaaaaaaaaattgtaactttcaatttttccaggaatgtcaag 3656628  T
Q  123 ttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaa 222  Q
    ||||||| |||||||       |||||| |||||||||||||        |||||||||| |   |||||||||||| | ||||||||||||||||||||    
T  3656627 ttatttgccaaacactttttttaacaaacacccaagaatcaa--------attttcattccctaatatgttattcctgggaataatttgtgtttcccaaa 3656536  T
Q  223 aacaaacgcc 232  Q
    ||||||||||    
T  3656535 aacaaacgcc 3656526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 59 - 232
Target Start/End: Original strand, 6694023 - 6694199
Alignment:
Q  59 ccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaa- 157  Q
    ||||||||||||||| ||||||||        |||||| ||||||||||| ||| ||| ||||||||||||  ||||||       ||||||||||| |     
T  6694023 ccatgatattatgcatagattttttaaaaaaattgtaacttccaattttttcaggaatgtcaagttatttgctaaacactttttttaacaaataccccac 6694122  T
Q  158 gaatcaaattttcatattttcattctcaggtatg--ttattcctagaaataatttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||||||||||||||||||||||||  |   |||||||| | ||||||||||||||||| ||| ||| ||||    
T  6694123 gaatcaaattttcatattttcattctcaggggttgtttattcctgggaataatttgtgtttccccaaagcaagcgcc 6694199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 3027813 - 3027730
Alignment:
Q  146 acaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaaacaaac 229  Q
    ||||||||||| |||||||||||||||||||||||||  ||||| |||||||||   ||||||||||||||| | |||||||||    
T  3027813 acaaatacccaggaatcaaattttcatattttcattccgaggtaagttattcctgagaataatttgtgtttcactaaaacaaac 3027730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 3027949 - 3027900
Alignment:
Q  19 atgaatttattcccatgtaaagagatgagaatgtgcattcccatgatatt 68  Q
    |||||||||||||| ||| || || |||||||||||||||||| ||||||    
T  3027949 atgaatttattcccttgtgaaaaggtgagaatgtgcattcccaagatatt 3027900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 22213492 - 22213269
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn-ttgtaatttccaattttt 108  Q
    ||||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||          |||||| |||||||||||    
T  22213492 attattcccatgaatatattcccatgtaaagatatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaattgtaacttccaattttt 22213393  T
Q  109 ccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataat 208  Q
     ||  ||| |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | |||||||||||||| | ||||||    
T  22213392 tcaagaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataat 22213293  T
Q  209 ttgtgtttcccaaaaacaaacgcc 232  Q
    ||||||||||||||||||||||||    
T  22213292 ttgtgtttcccaaaaacaaacgcc 22213269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 25897901 - 25898125
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn--ttgtaatttccaatttt 107  Q
    ||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||            |||||| ||||||||||    
T  25897901 attattcccatgaatatattcccatataaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaattgtaacttccaatttt 25898000  T
Q  108 tccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataa 207  Q
    | ||| ||| |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||    
T  25898001 ttcaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataa 25898100  T
Q  208 tttgtgtttcccaaaaacaaacgcc 232  Q
    |||||||||||||||||||||||||    
T  25898101 tttgtgtttcccaaaaacaaacgcc 25898125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 38 - 232
Target Start/End: Complemental strand, 36275734 - 36275538
Alignment:
Q  38 aagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn--ttgtaatttccaatttttccagaaatatcaagttatttgtcaaac 135  Q
    |||| ||| ||||||||||||||||||||||||||| ||||||||          |||||| ||||||||||||||| ||| |||||||||||| |||||    
T  36275734 aagatatgggaatgtgcattcccatgatattatgcatagattttttttaaaaaaattgtaacttccaatttttccaggaatgtcaagttatttgccaaac 36275635  T
Q  136 acnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaaacaaacgcc 232  Q
    ||       |||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  36275634 actttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctggaaataatttgtgtttcccaaaaacaaacgcc 36275538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 42394010 - 42394239
Alignment:
Q  10 attattctcatgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttc 109  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||         |||||| || |||||||||    
T  42394010 attattcccatgaatttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcataga-tttaaaaaaaaattgtaactttcaatttttc 42394108  T
Q  110 cagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaa--------attttcatattttcattctcaggtatgttattcctag 201  Q
    ||  ||| |||||||||||| |||||||       ||||||||||||||||||||        |||||||||||||||||| | |||||||||||||| |    
T  42394109 catgaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcatattttcattcccgggtatgttattcctgg 42394208  T
Q  202 aaataatttgtgtttcccaaaaacaaacgcc 232  Q
    |||||||||||||||||||||||||||||||    
T  42394209 aaataatttgtgtttcccaaaaacaaacgcc 42394239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 26945872 - 26945665
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttccagaaatatcaagtt 124  Q
    ||||||||||||||||||||| ||||||||| |||||| |||||||||| ||||||          |||||| ||||||||||||||| ||| |||||||    
T  26945872 ttattcccatgtaaagagatgggaatgtgcagtcccataatattatgcatagatttaaaaaaaaaattgtaacttccaatttttccaggaatgtcaagtt 26945773  T
Q  125 atttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaaa 224  Q
    ||||| |||||||       ||||||||| |||||||||||||||||||||||||||| ||  ||||||||| || ||||||||||||||||||| ||||    
T  26945772 atttgccaaacactttttttaacaaatacacaagaatcaaattttcatattttcattcccatatatgttatttctggaaataatttgtgtttccccaaaa 26945673  T
Q  225 caaacgcc 232  Q
    ||||||||    
T  26945672 caaacgcc 26945665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 30493876 - 30494084
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn--ttgtaatttccaatttttccagaaatatcaag 122  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||            |||||| ||||||||||||||| ||| |||||    
T  30493876 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaattgtaacttccaatttttccaggaatgtcaag 30493975  T
Q  123 ttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaa 222  Q
    ||||||| |||||||       ||||||||||||| |||||||||||||||||||||||| | ||||| |||||||| | |||||||||||||| |||||    
T  30493976 ttatttgccaaacactttttttaacaaatacccaataatcaaattttcatattttcattcccgggtatattattcctgggaataatttgtgttttccaaa 30494075  T
Q  223 aacaaacgc 231  Q
    |||||||||    
T  30494076 aacaaacgc 30494084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 30534219 - 30534427
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn--ttgtaatttccaatttttccagaaatatcaag 122  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||            |||||| ||||||||||||||| ||| |||||    
T  30534219 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaattgtaacttccaatttttccaggaatgtcaag 30534318  T
Q  123 ttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaa 222  Q
    ||||||| |||||||       ||||||||||||| |||||||||||||||||||||||| | ||||| |||||||| | |||||||||||||| |||||    
T  30534319 ttatttgccaaacactttttttaacaaatacccaataatcaaattttcatattttcattcccgggtatattattcctgggaataatttgtgttttccaaa 30534418  T
Q  223 aacaaacgc 231  Q
    |||||||||    
T  30534419 aacaaacgc 30534427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 26674266 - 26674060
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnnttgtaatttccaatttttccagaaatatcaagtt 124  Q
    ||||||||||||||||||||| ||||||||| |||||| |||||||||| ||||||          |||||| ||||||||||||||| ||| |||||||    
T  26674266 ttattcccatgtaaagagatgggaatgtgcagtcccataatattatgcatagattta-aaaaaaaattgtaacttccaatttttccaggaatgtcaagtt 26674168  T
Q  125 atttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaaaaa 224  Q
    ||||| |||||||       ||||||||| |||||||||||||||||||||||||||| ||  ||||||||| || ||||||||||||||||||| ||||    
T  26674167 atttgccaaacactttttttaacaaatacacaagaatcaaattttcatattttcattcccatatatgttatttctggaaataatttgtgtttccccaaaa 26674068  T
Q  225 caaacgcc 232  Q
    ||||||||    
T  26674067 caaacgcc 26674060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 13946366 - 13946576
Alignment:
Q  18 catgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagattt----tt--nnnnnnnnttgtaatttccaatttttcca 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    ||          |||||| ||||||||||||||    
T  13946366 catgaatttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcatagatttaaaattaaaaaaaaaattgtaacttccaatttttcca 13946465  T
Q  112 gaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttg 211  Q
    ||||| |||||||||||| ||||||        ||||||||||||||||||||        |||||||||||| |||||||||||||| | |||||  |     
T  13946466 gaaatgtcaagttatttgccaaacattttttttaacaaatacccaagaatcaa--------attttcattctcgggtatgttattcctgggaataa--ta 13946555  T
Q  212 tgtttcccaaaaacaaacgcc 232  Q
    |||||||||||||||||||||    
T  13946556 tgtttcccaaaaacaaacgcc 13946576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 232
Target Start/End: Complemental strand, 11740677 - 11740537
Alignment:
Q  92 tgtaatttccaatttttccagaaatatcaagttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatg 191  Q
    ||||| |||| ||||| | || ||| |||||||||||| |||||||       ||||||||| || ||||||||||||||||||||||||| |  |||||    
T  11740677 tgtaacttcctattttccaaggaatgtcaagttatttgccaaacactttttttaacaaatacacaggaatcaaattttcatattttcattcccgagtatg 11740578  T
Q  192 ttattcctagaaataatttgtgtttcccaaaaacaaacgcc 232  Q
    ||||| ||   | ||||||||||||||| ||||||||||||    
T  11740577 ttatttctgagagtaatttgtgtttccccaaaacaaacgcc 11740537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 59229 - 59019
Alignment:
Q  25 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcaaagatttttnnnnnnnn---ttgtaatttccaatttttccagaaatatcaa 121  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||           |||||| ||||||||||||||| ||  ||||    
T  59229 ttattcccatgtaaagagatgagaatgttcattcccatgatattatgcatagatttttaaaaaaaaaaattgtaacttccaatttttccaggaacgtcaa 59130  T
Q  122 gttatttgtcaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattctcaggtatgttattcctagaaataatttgtgtttcccaa 221  Q
    ||||||||  ||||||       |||||||||||||||||||||||||||||||||||||| | |||||||||||||  | |||||||||||||||||||    
T  59129 gttatttgcaaaacacttttcttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcccgggaataatttgtgtttcccaa 59030  T
Q  222 aaacaaacgcc 232  Q
    |||||||||||    
T  59029 aaacaaacgcc 59019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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