View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_50 (Length: 316)
Name: NF13940_low_50
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 7587680 - 7587937
Alignment:
| Q |
11 |
caaaggcaaagtcaaaattttcatcatttgaaggctgcaaacatatatagcaaaatcaaatcacttgccaacaaactagaaatagtgaagacaccaaaat |
110 |
Q |
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| T |
7587680 |
caaaggcaaagtcaaaattttcatcatttgaaggctgcaaacatatatagcaaaatcaaatcactagccaacaaactagaaatagtgaagacactaaaat |
7587779 |
T |
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| Q |
111 |
tagaaatggttgtttttaattaatttttataggtaattatannnnnnnatagtagtattgaaaattaagcaaaaaagtaatagtcatagttttaaattgt |
210 |
Q |
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| T |
7587780 |
tagaaacggttgtttttaattaatttttataggtaattata-ttttttatagtagtattgaaaattaagcaaaaaagtaatagtcatagttttaaattgt |
7587878 |
T |
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| Q |
211 |
gatatgcaactgtaaccaggaccgttcttgagggggtgcaaacagctctactaagctga |
269 |
Q |
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| T |
7587879 |
gatctgcaaccgtaaccaggaccgtttttgagggggtgcaaacagctctactaagctga |
7587937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 271
Target Start/End: Complemental strand, 33978710 - 33978676
Alignment:
| Q |
237 |
cttgagggggtgcaaacagctctactaagctgagc |
271 |
Q |
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| T |
33978710 |
cttgagggggtgcaaacagctctactgagctgagc |
33978676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 9492007 - 9491966
Alignment:
| Q |
227 |
caggaccgttcttgagggggtgcaaacagctctactaagctg |
268 |
Q |
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| T |
9492007 |
cagggccgtccttgagggggtgcaaacagctctactgagctg |
9491966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 1176291 - 1176251
Alignment:
| Q |
227 |
caggaccgttcttgagggggtgcaaacagctctactaagct |
267 |
Q |
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| T |
1176291 |
cagggccgtccttgagggggtgcaaacagctctactgagct |
1176251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 11574447 - 11574488
Alignment:
| Q |
227 |
caggaccgttcttgagggggtgcaaacagctctactaagctg |
268 |
Q |
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| T |
11574447 |
caggaccgtccttgagggggtgcaaacagctctactgagctg |
11574488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 34620251 - 34620211
Alignment:
| Q |
227 |
caggaccgttcttgagggggtgcaaacagctctactaagct |
267 |
Q |
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| T |
34620251 |
cagggccgttcttgagggggtgcaaacaactctactgagct |
34620211 |
T |
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