View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_51 (Length: 316)
Name: NF13940_low_51
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 24893149 - 24892858
Alignment:
| Q |
17 |
attaatgttgctgggtaagactgtatgagtaaagatctgcaaaaatatttaggatccgactattttaaaattttagaatttttaaaaaagtgtccaaata |
116 |
Q |
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| T |
24893149 |
attaatgttgttgggtaagactgtatgagtaaagatctgcaaaaatatttaggatccgactattttaaaattttagaatttttagaaaagtgtccaaata |
24893050 |
T |
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| Q |
117 |
tgaatttcatttaatatttatgatttagatgagtaaatgagttgatttaaccgattggttttcgaaaaataatgttgggttaaaacaactgtgactttga |
216 |
Q |
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| T |
24893049 |
tgaatttcatttaatatttatgatttagatgagtaaatgagttgattcaaccgattggttttcgaaaaataatgttgggttaaaacaactgtgactttga |
24892950 |
T |
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| Q |
217 |
ggggta--ttttcatcatttttggaatgttgaattgtgaaaacaaattgaccaataaattcgcctcgttgagacgtttgaaatgaacctatg |
306 |
Q |
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| T |
24892949 |
gggttattttttcatcatttttggaatgttgaactgtgaaaacaaattgaccaataaattcgcctcgtcgagacgtttgaaatgaacctatg |
24892858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 31348652 - 31348782
Alignment:
| Q |
56 |
caaaaatatttaggatccgactattttaaaattttagaatttttaaaaaagtgtccaaatatgaatttcatttaatatttatgatttagatgagtaaatg |
155 |
Q |
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|||||||||||| ||| |||||||||| ||||||||| ||| || ||||||||| |||| ||||||| |||| ||||||||||| |||| ||||||||| |
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| T |
31348652 |
caaaaatatttatgattcgactatttttaaattttagcattattggaaaagtgtctaaatgtgaattttatttgatatttatgatatagacgagtaaatg |
31348751 |
T |
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| Q |
156 |
agttgatttaaccgattggttttcgaaaaat |
186 |
Q |
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| T |
31348752 |
agttgattcaacctatttgttttcaaaaaat |
31348782 |
T |
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