View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13940_low_56 (Length: 292)

Name: NF13940_low_56
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13940_low_56
NF13940_low_56
[»] chr2 (1 HSPs)
chr2 (3-292)||(42967095-42967383)


Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 3 - 292
Target Start/End: Complemental strand, 42967383 - 42967095
Alignment:
Q  3 atcataaataataagaggattatgatgctcgctttgggtcaaatttctctaataatatatataataggcaaaattacatgaaaaatcttttaaattaatg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42967383 atcataaataataagaggattatgatgctcgctttgggtcaaatttctctaataacatatataataggcaaaattacatgaaaaatcttttaaattaatg 42967284  T
Q  103 taaggttttgaacttacttgaagaaattatttttctctgtttttgaaattttagaactaagaagttctattccacagtaaaattatttttctttgttttg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42967283 taaggttttgaacttacttgaagaaattatttttctctgtttttgaaattttagacctaagaagttctattccacagtaaaattatttttctttgttttg 42967184  T
Q  203 tcctcgcaaacattgttggtaaaaaatataaagggtcatgctaccaagtgctcttatgacacttgtttagaaagtaaaaatgaaagggaa 292  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||    
T  42967183 tcctcgccaacattgttggtaaaaaa-ataaagggtcatgctaccaagtgcccttatgacatttgtttagaaggtaaaaatgaaagggaa 42967095  T

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