View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_58 (Length: 281)
Name: NF13940_low_58
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 6939663 - 6939401
Alignment:
| Q |
1 |
aaatggagagtgaaagtgagatcccaattttggatttccgtaggagtagtggagtgacattagaagaagggagtgaagggtggaaagaaatgagcaagaa |
100 |
Q |
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| T |
6939663 |
aaatggagaatgaaagtgagatcccaattttggatttccgtaggagtagtggagtgacattagaaaaagggagtgaagggtggaaagaaatgagcaagaa |
6939564 |
T |
|
| Q |
101 |
agtgagagaagcatttgagagtcgaggttgcttcctcttaaaatgtgatgaaatctcaaaggaattatgtggagaattgttcacaggaatgaaatctttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6939563 |
agtgagagaagcatttgagagtcgaggttgcttcctcttaaaatgtgatgaaatctcaaaggaattatgtggacaattgttcacaggaatgaaatctttg |
6939464 |
T |
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| Q |
201 |
tttgatctgcctgaggacaccaaggagaagtttgttagtccaaagctttacaggggttacatc |
263 |
Q |
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| T |
6939463 |
tttgatctgcctgaagacaccaaggagaaatttgttagtccaaagctttacaggggttacatc |
6939401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 65 - 232
Target Start/End: Complemental strand, 6932196 - 6932029
Alignment:
| Q |
65 |
agaagggagtgaagggtggaaagaaatgagcaagaaagtgagagaagcatttgagagtcgaggttgcttcctcttaaaatgtgatgaaatctcaaaggaa |
164 |
Q |
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| T |
6932196 |
agaagagagtgaaggatggaaagaaatgtgcaagaaagtgagagaagcatttgagaatcatggttgtttcatcgtaaggggtgatgaaatcttgaatcaa |
6932097 |
T |
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| Q |
165 |
ttatgtggagaattgttcacaggaatgaaatctttgtttgatctgcctgaggacaccaaggagaagtt |
232 |
Q |
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| T |
6932096 |
tcacgtgaagaattgttcacaggcatgaaatcattgtttgatctacccgaggagactaagcagaagtt |
6932029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 49831688 - 49831903
Alignment:
| Q |
17 |
tgagatcccaattttggatttccgtaggagtagtggagtgacattagaagaagggagtgaagggtggaaagaaatgagcaagaaagtgagagaagcattt |
116 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49831688 |
tgagatcccaattttggattttcgtaaaagtagtggagtgacattagaagaaggcagtgaagggtggaaagaaatgagcaagaaagtgagagaagcattt |
49831787 |
T |
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| Q |
117 |
gagagtcgaggttgcttcctcttaaaatgtgatgaaatctcaaaggaattatgtggagaattgttcacaggaatgaaatctttgtttgatctgcctgagg |
216 |
Q |
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| T |
49831788 |
gagagtcatggttgcttcttcttaaagtgtgatgaaataccaaatgaattacgtgaaaaaatgttcactggtatgaaatcattgtttgatctacctgagg |
49831887 |
T |
|
| Q |
217 |
acaccaaggagaagtt |
232 |
Q |
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| T |
49831888 |
agaccaagcagaagtt |
49831903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 2096427 - 2096357
Alignment:
| Q |
64 |
aagaagggagtgaagggtggaaagaaatgagcaagaaagtgagagaagcatttgagagtcgaggttgcttc |
134 |
Q |
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| T |
2096427 |
aagaagggagtgaggagtggaaaaaaatgagcaaaaaagtgagagaagcatgtgagagtcatggttgcttc |
2096357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 12458883 - 12458958
Alignment:
| Q |
66 |
gaagggagtgaagggtggaaagaaatgagcaagaaagtgagagaagcatttgagagtcgaggttgcttcctcttaa |
141 |
Q |
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| T |
12458883 |
gaagggagtgaggagtggaaaaagatgagcaaaaaagtgagagaagcatgtgagagtcatggttgcttcttcttaa |
12458958 |
T |
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