View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13940_low_6 (Length: 718)

Name: NF13940_low_6
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13940_low_6
NF13940_low_6
[»] chr1 (13 HSPs)
chr1 (19-714)||(45549851-45550545)
chr1 (375-528)||(45545035-45545188)
chr1 (368-521)||(45544125-45544281)
chr1 (392-527)||(45548928-45549063)
chr1 (368-494)||(45549819-45549948)
chr1 (19-115)||(45544157-45544253)
chr1 (237-370)||(45549548-45549680)
chr1 (19-94)||(45548936-45549008)
chr1 (21-116)||(45545062-45545154)
chr1 (296-368)||(45550837-45550909)
chr1 (597-664)||(45544343-45544410)
chr1 (169-217)||(45544297-45544344)
chr1 (307-371)||(45545621-45545685)
[»] chr4 (1 HSPs)
chr4 (597-714)||(36615875-36615992)
[»] chr5 (3 HSPs)
chr5 (574-680)||(19670886-19670993)
chr5 (473-538)||(19691998-19692064)
chr5 (403-455)||(19671100-19671152)


Alignment Details
Target: chr1 (Bit Score: 631; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 19 - 714
Target Start/End: Original strand, 45549851 - 45550545
Alignment:
Q  19 ggctggatatttcgttctgtggtaggttttggctcatcatcatgcacattcattctctcaagagattcctcaagtggtttaatctcttttctttcatctg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45549851 ggctggatatttcgttctgtggtaggttttggctcatcatcatgcacattcattctctcaagagattcctcaagtggtttaatgtcttttctttcatctg 45549950  T
Q  119 taagccaacaaatcgaagtattaatctctatgtaaataatccgttagggtcatgggaagctaacaagagtaaatttcacattttatcttaactccaaaac 218  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45549951 taagccaacaaatcaaagtattaatctctatgtaaataatctgttagggtcatgggaagctaacaagagtaaatttcacattttatcttaactccaaaac 45550050  T
Q  219 aatgaatgagtctatttaaaatagtactctgatatattgatacataatgaagagtctnnnnnnntcggaaacttccgttgaattgtcttactcaccttcc 318  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||    
T  45550051 aatgaatgagtctatttaaaatagtactctgacatattgatacataatgaagagtctaaaaaaatcggaaacttc-gttgaattgtcttactcaccttcc 45550149  T
Q  319 ccacatggatcagtgtctttgatttgataattgggaagagtatatgcctcagcaggagggtattcaatgtcgacaacagatgactggatttttggttctg 418  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45550150 ccacttggatcagtgtctttgatttgataattgggaagagtatatgcctcagcaggagggtattcaatgtcgacaacagatgactggatttttggttctg 45550249  T
Q  419 tggtaggttttgactcatcatgcacattcattctctcgagagattcctcgagtggtgtaatgtcttttatttcatcactttctggaagccaacacacatg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45550250 tggtaggttttgactcatcatgcacattcattctctcgagagattcctcgagtggtgtaatgtcttttatttcatcactttctggaagccaacacacatg 45550349  T
Q  519 aaagtattaactcaatggaaaacaaattgttagggtcactggagaaagagtaaaattcacattttatcctaatccaagaaatttattgaatctcaatgta 618  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45550350 aaagtattaactcaatggaaaacaaattgttagtgtcactggagaaagagtaaaattcacattttatcctaatccaagaaatttattgaatctcaatgta 45550449  T
Q  619 aataaaaatgaacgtctctattgtcttgtattattttcattgaatctatttttaacaaaacttaactaatcatacctaagtttctaaggtatatat 714  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  45550450 aataaaaatgaacgtctctattgtcttgtattgttttcattgaatctatttttaacaaaacttaaccgatcatacctaagtttctaaggtatatat 45550545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 375 - 528
Target Start/End: Original strand, 45545035 - 45545188
Alignment:
Q  375 agggtattcaatgtcgacaacagatgactggatttttggttctgtggtaggttttgactcatcatgcacattcattctctcgagagattcctcgagtggt 474  Q
    |||||||||| ||||  ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  45545035 agggtattcagtgtcagcaacatatgactggatttttggttctgtggtaggttttgactcgtcatgcacattcattctctcaagagattcctcgagtggt 45545134  T
Q  475 gtaatgtcttttatttcatcactttctggaagccaacacacatgaaagtattaa 528  Q
    || ||||||||||||||||||||| ||| |||||||| || |||||||||||||    
T  45545135 gttatgtcttttatttcatcacttcctgtaagccaacgcaaatgaaagtattaa 45545188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 368 - 521
Target Start/End: Original strand, 45544125 - 45544281
Alignment:
Q  368 cagcaggagggtattcaatgtcgacaacagatgactggatttttggttctgtggtaggttttg---actcatcatgcacattcattctctcgagagattc 464  Q
    |||||| |||||||||||||||   |||| ||| ||||||||||| ||| |||||||| ||||     ||||||||||||||||||||||| ||||||||    
T  45544125 cagcagaagggtattcaatgtcagtaacaaatggctggatttttgtttcagtggtaggatttggttcatcatcatgcacattcattctctcaagagattc 45544224  T
Q  465 ctcgagtggtgtaatgtcttttatttcatcactttctggaagccaacacacatgaaa 521  Q
    ||| || ||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  45544225 ctcaagcggtgtaatgtcttttgtttcattactttctgtaagccaacacacatgaaa 45544281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 392 - 527
Target Start/End: Original strand, 45548928 - 45549063
Alignment:
Q  392 caacagatgactggatttttggttctgtggtaggttttgactcatcatgcacattcattctctcgagagattcctcgagtggtgtaatgtcttttatttc 491  Q
    |||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| |||  | ||||||| |||    
T  45548928 caacaggtggctggatttttggttctgtggtaggttttggctcatcatgcacattcattctctctagagattcctcaagtgctgttgtttcttttacttc 45549027  T
Q  492 atcactttctggaagccaacacacatgaaagtatta 527  Q
    | ||||| ||| || |||||| |||||||| |||||    
T  45549028 accacttcctgtaaaccaacatacatgaaattatta 45549063  T

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Target: chr1; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 368 - 494
Target Start/End: Original strand, 45549819 - 45549948
Alignment:
Q  368 cagcaggagggtattcaatgtcgacaacagatgactggatttttggttctgtggtaggttttgac---tcatcatgcacattcattctctcgagagattc 464  Q
    ||||||||||||||||| ||||   |||||||| |||||| ||| |||||||||||||||||| |   ||||||||||||||||||||||| ||||||||    
T  45549819 cagcaggagggtattcagtgtcagtaacagatggctggatatttcgttctgtggtaggttttggctcatcatcatgcacattcattctctcaagagattc 45549918  T
Q  465 ctcgagtggtgtaatgtcttttatttcatc 494  Q
    ||| |||||| ||||||||||| |||||||    
T  45549919 ctcaagtggtttaatgtcttttctttcatc 45549948  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 45544157 - 45544253
Alignment:
Q  19 ggctggatatttcgttctgtggtaggttttggctcatcatcatgcacattcattctctcaagagattcctcaagtggtttaatctcttttctttcat 115  Q
    |||||||| |||  ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| ||||||    
T  45544157 ggctggatttttgtttcagtggtaggatttggttcatcatcatgcacattcattctctcaagagattcctcaagcggtgtaatgtcttttgtttcat 45544253  T

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Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 237 - 370
Target Start/End: Original strand, 45549548 - 45549680
Alignment:
Q  237 aaatagtactctgatatattgatacataatgaagagtctnnnnnnntcggaaacttccgttgaattgtcttactcaccttccccacatggatcagtgtct 336  Q
    ||||||||| |||||||||||||||||||||| ||||||       || || ||||  ||||||||| | |||||||||| ||||| || ||||| ||||    
T  45549548 aaatagtacactgatatattgatacataatgaggagtctaaataaatctgatacttt-gttgaattgacctactcacctttcccacttgaatcagcgtct 45549646  T
Q  337 ttgatttgataattgggaagagtatatgcctcag 370  Q
    ||| ||||||||||||||||||||||||||||||    
T  45549647 ttggtttgataattgggaagagtatatgcctcag 45549680  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 45548936 - 45549008
Alignment:
Q  19 ggctggatatttcgttctgtggtaggttttggctcatcatcatgcacattcattctctcaagagattcctcaagtg 94  Q
    |||||||| ||| ||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||    
T  45548936 ggctggatttttggttctgtggtaggttttggctcat---catgcacattcattctctctagagattcctcaagtg 45549008  T

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Target: chr1; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 45545062 - 45545154
Alignment:
Q  21 ctggatatttcgttctgtggtaggttttggctcatcatcatgcacattcattctctcaagagattcctcaagtggtttaatctcttttctttcatc 116  Q
    |||||| ||| |||||||||||||||||| ||| ||||   |||||||||||||||||||||||||||| |||||| | || |||||| |||||||    
T  45545062 ctggatttttggttctgtggtaggttttgactcgtcat---gcacattcattctctcaagagattcctcgagtggtgttatgtcttttatttcatc 45545154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 45550837 - 45550909
Alignment:
Q  296 ttgaattgtcttactcaccttccccacatggatcagtgtctttgatttgataattgggaagagtatatgcctc 368  Q
    |||||||| | ||||||||| | |||| ||||||||| |||||| ||||||||||||||||||||||| ||||    
T  45550837 ttgaattggcctactcacctgcaccacttggatcagtttctttggtttgataattgggaagagtatattcctc 45550909  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 597 - 664
Target Start/End: Original strand, 45544343 - 45544410
Alignment:
Q  597 aaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattattttcattgaatc 664  Q
    ||||| ||||||| |||||||||||||||| ||| |  ||||||| ||| ||||||||||||||||||    
T  45544343 aaattgattgaatatcaatgtaaataaaaaagaatgagtctattgacttatattattttcattgaatc 45544410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 45544297 - 45544344
Alignment:
Q  169 catgggaagctaacaagagtaaatttcacattttatcttaactccaaaa 217  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||||||    
T  45544297 catgggaagctaacaagagtaaatctcaca-tttaacttaactccaaaa 45544344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 45545621 - 45545685
Alignment:
Q  307 tactcaccttccccacatggatcagtgtctttgatttgataattgggaagagtatatgcctcagc 371  Q
    |||||||||||| ||  ||||| |||||||||| |||| ||| |||||| |||||||||||||||    
T  45545621 tactcaccttcctcatttggattagtgtctttggtttggtaagtgggaaaagtatatgcctcagc 45545685  T

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Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 597 - 714
Target Start/End: Complemental strand, 36615992 - 36615875
Alignment:
Q  597 aaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattattttcattgaatctatttttaacaaaacttaactaatcataccta 696  Q
    ||||| ||||||| |||||| ||||||||||||| |  ||||||||||||||||||||||| ||||| ||||||||||||||||  || | |||||| ||    
T  36615992 aaattgattgaatgtcaatgcaaataaaaatgaatgagtctattgtcttgtattattttcactgaatttatttttaacaaaactataccattcatactta 36615893  T
Q  697 agtttctaaggtatatat 714  Q
    | ||||||||||| ||||    
T  36615892 aatttctaaggtaaatat 36615875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 574 - 680
Target Start/End: Complemental strand, 19670993 - 19670886
Alignment:
Q  574 ttcacattttatcctaa-tccaagaaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattattttcattgaatctattttta 672  Q
    ||||||||||||| ||  ||||| ||||| |||||||| ||||| ||||||||||||| |  | ||||||||||||||||||||||||||| ||||||||    
T  19670993 ttcacattttatcttatctccaaaaaattgattgaatcacaatgcaaataaaaatgaatgaatatattgtcttgtattattttcattgaatatattttta 19670894  T
Q  673 acaaaact 680  Q
    ||||||||    
T  19670893 acaaaact 19670886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 473 - 538
Target Start/End: Complemental strand, 19692064 - 19691998
Alignment:
Q  473 gtgtaatgtcttttatttcatcactttctggaagccaacacacatgaaagtattaa-ctcaatggaa 538  Q
    ||||||||| |||||||| ||||||||||   |||||||||| ||||||||||||| ||||||||||    
T  19692064 gtgtaatgtattttatttaatcactttctatgagccaacacatatgaaagtattaatctcaatggaa 19691998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 455
Target Start/End: Complemental strand, 19671152 - 19671100
Alignment:
Q  403 tggatttttggttctgtggtaggttttgactcatcatgcacattcattctctc 455  Q
    ||||||||||||||||| || ||||| | ||||||||||||||||||| ||||    
T  19671152 tggatttttggttctgttgttggtttaggctcatcatgcacattcattatctc 19671100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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