View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13940_low_60 (Length: 277)
Name: NF13940_low_60
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_60 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 30644782 - 30645025
Alignment:
| Q |
17 |
atagttttgaaaataaataaatgcatgtggtgagattatcgggacttgaatggcgtgcaagtgcaaaatgaactaataaagtatccatccacatccagca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30644782 |
atagttttgaaaataaataaatgcatgtggtgagattattgggacttgaatggcgtgcaagtgcaaaatgaactaataaagtatccatccacatccagca |
30644881 |
T |
|
| Q |
117 |
ctacacgtgcaattattttcttcttcttgctaaaaacgaactcaacttatttccagctgtgtacacatttggttcctacgcacaacacgccaactagttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30644882 |
ctacacgtgcaattattttcttcttcttgctaaaaacgaactcaacttatttccagctgtgtacacatttggttcctacgcacaacacgccaactagttt |
30644981 |
T |
|
| Q |
217 |
ggtcaccaccccaccagaactgagctatcttcacctataatagt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30644982 |
ggtcaccaccccaccagaactgagctatcttcacctataatagt |
30645025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University