View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_64 (Length: 259)
Name: NF13940_low_64
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 41150780 - 41150542
Alignment:
| Q |
9 |
tcaatgtgattt-gatcaaagttgcatttttgtattttatcgaagtcatcgtgctactatgattttgttagaatcaccgtgattccaaacatgtattaga |
107 |
Q |
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| T |
41150780 |
tcaatgtgattttgatcaaagttgcatttttgtattttaacgaagtcatcgtgctactatgattttattagaatcatcgtgattccaaacatgtattaga |
41150681 |
T |
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| Q |
108 |
cataacgaacaaaggtaaaattctaactaacctttccttggtgtaacgcatttagggcatgctcaatggaagagtaccctttagagggacaatctggatc |
207 |
Q |
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| T |
41150680 |
cataacgaacaaaggtaaaattctaactaacctttccttggtgtaacgcatttagggcatgctcaatggaagagtatcctttagagggacaatctggatc |
41150581 |
T |
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| Q |
208 |
accttcagcttcactcacaaagaaatcatcggtttcttg |
246 |
Q |
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| T |
41150580 |
accttcagcttcactcacgaagaaatcatcggtttcttg |
41150542 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 46090067 - 46090025
Alignment:
| Q |
58 |
gtgctactatgattttgttagaatcaccgtgattccaaacatg |
100 |
Q |
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| T |
46090067 |
gtgctactatgattttgttaaatttaccgtgattccaaacatg |
46090025 |
T |
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