View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13940_low_66 (Length: 253)

Name: NF13940_low_66
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13940_low_66
NF13940_low_66
[»] chr1 (3 HSPs)
chr1 (1-102)||(42662966-42663067)
chr1 (117-214)||(42663129-42663226)
chr1 (206-239)||(42663834-42663867)
[»] chr4 (1 HSPs)
chr4 (200-234)||(9018887-9018921)
[»] chr5 (2 HSPs)
chr5 (197-230)||(10948785-10948818)
chr5 (203-235)||(20407908-20407940)
[»] chr3 (1 HSPs)
chr3 (203-235)||(37817271-37817303)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 42662966 - 42663067
Alignment:
Q  1 gacttctcactgtcacttggtatatctttcatgaaacgttccagttctttacttcttgatatcagtggaaactggtaataatacaagaaattaagggttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42662966 gacttctcactgtcacttggtatatctttcatgaaacgttccagttctttacttcttgatatcagtggaaactggtaataatacaagaaattaagggttt 42663065  T
Q  101 aa 102  Q
    ||    
T  42663066 aa 42663067  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 42663129 - 42663226
Alignment:
Q  117 catatatatgagatactcttgatattttatgtattaaactgaagtgcaaacacaaaaaccaagcactctcccattgacaatgatagtaatttgaaaaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42663129 catatatatgagatactcttgatattttatgtattaaactgaagtgcaaacacaaaaaccaagcactctcccattgacaatgatagtaatttgaaaaa 42663226  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 42663834 - 42663867
Alignment:
Q  206 tttgaaaaaatgaaagtaattgaatgtaatattt 239  Q
    ||||||||||||||||||||||||||||||||||    
T  42663834 tttgaaaaaatgaaagtaattgaatgtaatattt 42663867  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 9018921 - 9018887
Alignment:
Q  200 tagtaatttgaaaaaatgaaagtaattgaatgtaa 234  Q
    ||||||||||| |||||||||||||||||||||||    
T  9018921 tagtaatttgagaaaatgaaagtaattgaatgtaa 9018887  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 10948818 - 10948785
Alignment:
Q  197 tgatagtaatttgaaaaaatgaaagtaattgaat 230  Q
    ||||||||||||||||||||| ||||||||||||    
T  10948818 tgatagtaatttgaaaaaatggaagtaattgaat 10948785  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 20407908 - 20407940
Alignment:
Q  203 taatttgaaaaaatgaaagtaattgaatgtaat 235  Q
    |||||||||||||||||||| ||||||||||||    
T  20407908 taatttgaaaaaatgaaagtgattgaatgtaat 20407940  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 37817271 - 37817303
Alignment:
Q  203 taatttgaaaaaatgaaagtaattgaatgtaat 235  Q
    |||||| ||||||||||||||||||||||||||    
T  37817271 taattttaaaaaatgaaagtaattgaatgtaat 37817303  T

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