View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_69 (Length: 240)
Name: NF13940_low_69
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_69 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27219939 - 27220159
Alignment:
| Q |
1 |
tacatttatttaaaacccttggaagggccatattagaaccgaaaagtcataaccaattaaaaatgaacttttagcactagtaagttgtagcaccaaatcg |
100 |
Q |
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| T |
27219939 |
tacatttatttaaaacccttggaagggccatataagaaccgaaaagtcataaccaatttaaaatgaacttttagcactagtaagttgtagcactaaatcg |
27220038 |
T |
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| Q |
101 |
ttattaagtgattgctatagttgaacttttagaacaagtaatgattaacaaagtaacactaatttctgaattagtttatatatttttactcataccaagt |
200 |
Q |
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| T |
27220039 |
ttattaagtgattgctatagttgaacttttagaacaagtaatgattaacaaagtaacactaatttctgaattagtttatatatttttactcataccaagt |
27220138 |
T |
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| Q |
201 |
ttgatttccacaagtacaatt |
221 |
Q |
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|||||| |||||||||||||| |
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| T |
27220139 |
ttgattcccacaagtacaatt |
27220159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 27220264 - 27220301
Alignment:
| Q |
157 |
cactaatttctgaattagtttatatatttttactcata |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
27220264 |
cactaatttctgaattagtttatatatttttactcata |
27220301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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