View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_71 (Length: 239)
Name: NF13940_low_71
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 47253799 - 47253588
Alignment:
| Q |
5 |
tacttacttaggtctgaaacaatcaaatgtatccaatctaaatatattagactttctatttatatttaaaatttaaaataggagagagtagtaaccaagt |
104 |
Q |
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| T |
47253799 |
tacttacttaggtctgaaacaatcaaatgtatccgatctaaatatattagactttttatttatatttaaaatttaaaataggag----tagtaaccaagt |
47253704 |
T |
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| Q |
105 |
aacataaaaattacttgtggggttgaaatagtccaaaacctatattctaatactagtggatggactaagacttaagattcagaagattttatccaacatg |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | | |||||||||||||||||||||||| |
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| T |
47253703 |
aacataaaaattacttgtggggttgaaatagtccaaaacctatttcctaatactagtggatggactaagacctta-attcagaagattttatccaacatg |
47253605 |
T |
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| Q |
205 |
tatgagaatggaaagtc |
221 |
Q |
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||||||||||||||||| |
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| T |
47253604 |
tatgagaatggaaagtc |
47253588 |
T |
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