View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_72 (Length: 238)
Name: NF13940_low_72
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_72 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 18046916 - 18047127
Alignment:
| Q |
9 |
acatcatcatcttcctacaagttaaggacatttcacgtggtcagtccagaaatgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcag |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18046916 |
acatcatcatcttcctacaagttaaggacatttcacgtggtcagtccacaaatgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcag |
18047015 |
T |
|
| Q |
109 |
gcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcccaaatagtattgaagaaatgaagcatttaagatatattgatctatc |
208 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18047016 |
gcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcccaaatagtattgaagaaatgaagcatttaagatatattgatctatc |
18047115 |
T |
|
| Q |
209 |
acggaacaatgt |
220 |
Q |
| |
|
|||||||||||| |
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| T |
18047116 |
acggaacaatgt |
18047127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 18034237 - 18034026
Alignment:
| Q |
9 |
acatcatcatcttcctacaagttaaggacatttcacgtggtcagtccagaaatgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18034237 |
acatcatcatcttcctacaagttaaggacatttcatgtggtcggtccacaatcaaatgcaagcaatcgtttgcttcagtcagatgatttttccttctcag |
18034138 |
T |
|
| Q |
109 |
gcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcccaaatagtattgaagaaatgaagcatttaagatatattgatctatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18034137 |
gcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcccaaatagtattgaagaaatgaagcatttaagatatattgatctatc |
18034038 |
T |
|
| Q |
209 |
acggaacaatgt |
220 |
Q |
| |
|
|||||||||||| |
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| T |
18034037 |
acggaacaatgt |
18034026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 4398410 - 4398199
Alignment:
| Q |
9 |
acatcatcatcttcctacaagttaaggacatttcacgtggtcagtccagaaatgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4398410 |
acatcatcatcttcctacaagttaaggacatttcacgtggtcagtccacaaatgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcag |
4398311 |
T |
|
| Q |
109 |
gcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcccaaatagtattgaagaaatgaagcatttaagatatattgatctatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4398310 |
gcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcccaaatagtattgaagaaatgaagcatttaagatatattgatctatc |
4398211 |
T |
|
| Q |
209 |
acggaacaatgt |
220 |
Q |
| |
|
|||||||||||| |
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|
| T |
4398210 |
acggaacaatgt |
4398199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 4498235 - 4498443
Alignment:
| Q |
12 |
tcatcatcttcctacaagttaaggacatttcacgtggtcagtccagaaatgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggct |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4498235 |
tcatcatcttcctacaagttaaggacatttcacgtggtcagtccacaaatgaatgcaagcaatcgttttcttcagtcagatgttttttccttctcaggct |
4498334 |
T |
|
| Q |
112 |
taaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4498335 |
taaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacg |
4498434 |
T |
|
| Q |
212 |
gaacaatgt |
220 |
Q |
| |
|
||||||||| |
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|
| T |
4498435 |
gaacaatgt |
4498443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 4519292 - 4519503
Alignment:
| Q |
9 |
acatcatcatcttcctacaagttaaggacatttcacgtggtcagtccagaaatgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
4519292 |
acatcatcatcttcctacaagttaaggacatttcatgtggtcggtccacaatcaaatgcaagcaatcgtttgcttcagtcagatgatttttccttctcag |
4519391 |
T |
|
| Q |
109 |
gcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcccaaatagtattgaagaaatgaagcatttaagatatattgatctatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4519392 |
gcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcccaaatagtattgaagaaatgaagcatttaagatatattgatctatc |
4519491 |
T |
|
| Q |
209 |
acggaacaatgt |
220 |
Q |
| |
|
|||||||||||| |
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|
| T |
4519492 |
acggaacaatgt |
4519503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 4529482 - 4529680
Alignment:
| Q |
8 |
gacatcatcatcttcctacaagttaaggacatttcacgtggtcagtccagaaatgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctca |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| | | | ||| ||| ||||||||||||| | ||| ||||||| | ||| ||||||| ||| |
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|
| T |
4529482 |
gacatcatcatcttcctacaagttaagaacatttctcttatgc---ccaaaaacgaatgcaagcaattatctgcgtcagtcaaacgttctttccttttca |
4529578 |
T |
|
| Q |
108 |
ggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcccaaatagtattgaagaaatgaagcatttaagatatattgatctat |
207 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||| | |||||||||||||||| |
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|
| T |
4529579 |
ggcttaaagttcttacgtgtgttgacactttgtggattgaatattctggcaatcccaaatagtattgaagagatgaagcatctgagatatattgatctat |
4529678 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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