View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_75 (Length: 227)
Name: NF13940_low_75
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_75 |
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| [»] scaffold0907 (2 HSPs) |
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Alignment Details
Target: scaffold0907 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0907
Description:
Target: scaffold0907; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 3171 - 3208
Alignment:
| Q |
101 |
tccaaatggttgaagttgaatttgaagatgaagagttg |
138 |
Q |
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| T |
3171 |
tccaaatggttgaagttgaatttgaagatgaagagttg |
3208 |
T |
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Target: scaffold0907; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 3071 - 3102
Alignment:
| Q |
1 |
cctttcaatgatgatttctctgacccgaatga |
32 |
Q |
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| T |
3071 |
cctttcaatgatgatttctctgacccgaatga |
3102 |
T |
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