View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_low_8 (Length: 634)
Name: NF13940_low_8
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 500
Target Start/End: Complemental strand, 52686977 - 52686489
Alignment:
| Q |
19 |
tcaactatgtttaaaatat--gccaaacactagagggctttattttggggatttctatgatttt-ataggaaaaatggaaagaggttactaatgccttat |
115 |
Q |
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| T |
52686977 |
tcaactatgtttaaaatatatgccaaacactagagggctttattttggggatttctatgatttttataggaaaaatggaaagaggttactaatgccttat |
52686878 |
T |
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| Q |
116 |
atcgactatttctaccaaccatgcataaattaatactt----tcctccgccccatacttctacgtatcatagttaagaatattgtgtgacagtcagaaaa |
211 |
Q |
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| T |
52686877 |
attgactatttctaccaaccatgcataaattaatacttaatttcctccgccccatacttctacgtatcatagttaagaatattgtgtgacagtcagaaat |
52686778 |
T |
|
| Q |
212 |
ttnnnnnnnnnnnnntaa----gaatgttgtgagtttgtgacacatcgcttaaacaaaatcaatataaattcattgtcaattaacattcgtattgacatg |
307 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52686777 |
tttttttaaaaaaaaaaaaaaagaatgttgtgagtttgtgacacatcgcttaaacaaaatcaatataaattcattgtcaattaacattcgtattaacatg |
52686678 |
T |
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| Q |
308 |
aacaatttacagtttattgatatttttaggtaaagaaattaactcattttcccataagtttatctaaatatcaaccatatgaagttaaattaattgctac |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||| |
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| T |
52686677 |
aacaatttacagtttattgatatttttaggtaaagaaattaactcattttcccataaatttatctaaatataaaccatatgaagtta----aattgctac |
52686582 |
T |
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| Q |
408 |
caaactattttgattatatgagtttctacactataaattatccacttaatataagacatacagatacatgtttctattctaaagaaaaatatc |
500 |
Q |
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| T |
52686581 |
caaactattttgattatatgagtttctacactataaattatccacttaatataagacatacagatacatgtttctattctaaagaaaaatatc |
52686489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 529 - 627
Target Start/End: Complemental strand, 52686460 - 52686363
Alignment:
| Q |
529 |
cagacgaaggctattctgatgtgcaagtgcaacaaaacaaagaagattagcactcactttcatacacgtacaagtgtacaacaacatcactaacctatg |
627 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52686460 |
cagacgaaggctattctgatgtgcaagtgcaacaaaacaaaga-gattaacactcactttcatacacgtacaagtgtacaacaacaccactaacctatg |
52686363 |
T |
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