View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13941_low_1 (Length: 359)
Name: NF13941_low_1
Description: NF13941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13941_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 174 - 346
Target Start/End: Complemental strand, 1435431 - 1435260
Alignment:
| Q |
174 |
aaataccaatgactcaatctcaattctcataacaataacaaacccactttcaccatctcattcaattttcttacaatggaagattcaaatccaaacaatt |
273 |
Q |
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| T |
1435431 |
aaataccaatgactcaatctcacttctcataacaataacaaaccca-tttcaacatctcattcaattttcttacaatggaagattcaaatcccaacaatt |
1435333 |
T |
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| Q |
274 |
cacttcagaaacttcattgttctgttaagaattacgattggggtttacctggtcaattgtcacaggttgctaa |
346 |
Q |
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| T |
1435332 |
cacttcagaaacttcattgttctgttaagaattacgattggggtttacctggtcaattgtcacaggttgctaa |
1435260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 1435609 - 1435501
Alignment:
| Q |
1 |
caaattcaacaccgtgttgaacaagataaattcccaaacaagaatccacaaaaaagtgattatcttcaa-----ttcattgcattcaaacaacaagacac |
95 |
Q |
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| T |
1435609 |
caaattcaacaccgtgttgaacaagataaattcccaaacaagaatccacaaaaaagtgattatcttcaattcaattcattgcattcaaacaacaagacac |
1435510 |
T |
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| Q |
96 |
aatccaccg |
104 |
Q |
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| T |
1435509 |
aatccaccg |
1435501 |
T |
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