View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13941_low_2 (Length: 306)

Name: NF13941_low_2
Description: NF13941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13941_low_2
NF13941_low_2
[»] scaffold0100 (1 HSPs)
scaffold0100 (9-301)||(50140-50432)


Alignment Details
Target: scaffold0100 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 50140 - 50432
Alignment:
Q  9 accaccgtgagagagaaacatcaatattgcatcgccgcgccgacgtaagtgtggcgttccggcaggattcttcacgcgaagcttcgccgcctgcggtgtc 108  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50140 accaccgtgagagagaaacctcaatattgcatcgccgcgccgacgtaagtgtggcgttccggcaggattcttcacgcgaagcttcgccgccggcggtgtc 50239  T
Q  109 tcgcgtttgatttcagcatcaatcacactcctacacttgcttgctctgtgagcatagcgcaagcttcgcgagcttgaggttgttgacaaacatgatgtcg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50240 tcgcgtttgatttcagcatcaatcacactcctacacttgcttgttctgttagcatagcgcaagcttcgcgagcttgaggttgttgacaaacatgatgtcg 50339  T
Q  209 cttcgccggaaaatgaagtcggtgaaaccttcaccgtcgtctcggatttcactttccggtcgccggagcaggaagaagatgtccacactacct 301  Q
    | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50340 cctcgccggaaaatgaagtcggtgaaaccttcgccgtcgtctcggatttcactttccggtcgccggagcaggaagaggatgtccacactacct 50432  T

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