View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13942_high_11 (Length: 328)
Name: NF13942_high_11
Description: NF13942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13942_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 31432962 - 31432639
Alignment:
| Q |
1 |
ttactgctaaataaagcgacgagcacatcatattatgttgatagaatgaaaaacttgaattaaaataagagaaatatttgatgtctaactagcaagaagt |
100 |
Q |
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| T |
31432962 |
ttactgctaaataaagcgacgagcacatcatattatgttggtagaataaaaaacttgaattaaaataagaggaatatttgatgtctaactagcaagaagt |
31432863 |
T |
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| Q |
101 |
tgcaatgattttgaagatatacgccttatttcgagaagtgaaaaggaccttgcaatatctttacacatgtcatggttaaatctgatatgagaatcttgag |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31432862 |
tgcaatgattttgaagatatacaccttatttcgagaagtgaaaaggaccttacaatatctttacacatgtcatggttaaatctgatatgagaatcttgag |
31432763 |
T |
|
| Q |
201 |
caacaagtaacaacatcacaagatgccgatattaaaagaattaggctgctaaactgtgtagatggaataaaagtgcagtgtaaataaaagagatataata |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31432762 |
caacaagtaacaacatcacaagatgctgatattaaaagaattaggctgctaaactgtgtagatggaataaaagtgcaatgtaaataaaagagatataata |
31432663 |
T |
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| Q |
301 |
tataataagagaattaatgttcat |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
31432662 |
tataataagagaattaatgttcat |
31432639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 33377884 - 33378118
Alignment:
| Q |
1 |
ttactgctaaataaagcgacgagcacatcatattatgttgatagaatgaaaaacttgaattaaaataagagaaatatttgatgtctaactagcaagaagt |
100 |
Q |
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||||||||||| |||||||| |||||||| |||||||||| |||||||||||||||| | ||||||||| |||||||||| |||||||| |||||||| |
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| T |
33377884 |
ttactgctaaagaaagcgacaagcacatcgtattatgttggcagaatgaaaaacttgattcgaaataagaggaatatttgatatctaactaacaagaagt |
33377983 |
T |
|
| Q |
101 |
tgcaatgattttgaaga----------tatacgccttatttcgagaagtgaaaaggaccttgcaatatctttacacatgtcatggttaaatctgatatga |
190 |
Q |
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| T |
33377984 |
tgcaattattatgaagatacaaagatgtatccgccttacttcgagcagcgaaaaagtccttacattatcttttcacatgtcatggttaaatctgatctga |
33378083 |
T |
|
| Q |
191 |
gaatcttgagcaacaagtaacaacatcacaagatg |
225 |
Q |
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| T |
33378084 |
gaatcttgagcaacaagtaacaacatcataagatg |
33378118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31439559 - 31439327
Alignment:
| Q |
1 |
ttactgctaaataaagcgacgagcacatcatattatgttgatagaatgaaaaacttgaattaaaataagagaaatatttgatgtctaactagcaagaagt |
100 |
Q |
| |
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|||||| |||| |||||||| ||||| || |||| ||||| |||||||||||||||| ||||| |||||| |||||||||||||||||||| ||||||| |
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| T |
31439559 |
ttactgttaaagaaagcgacaagcacttcgtattctgttggcagaatgaaaaacttgatttaaagtaagaggaatatttgatgtctaactagaaagaagt |
31439460 |
T |
|
| Q |
101 |
tgcaatgattttgaaga----------tatacgccttatttcgagaagtgaaaaggaccttgcaatatctttacacatgtcatggttaaatctgatatga |
190 |
Q |
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|||||||||| |||| |||||||||||||||||| |||||||| ||| || || ||||||| || |||||||||||||||||||| | |
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| T |
31439459 |
tgcaatgattacaaagatacgaagatgtatacgccttatttcgagtagtgaaaaagactttacattatcttttcatatgtcatggttaaatctgatct-- |
31439362 |
T |
|
| Q |
191 |
gaatcttgagcaacaagtaacaacatcacaagatg |
225 |
Q |
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||| ||||||||||||||||||||||||||||||| |
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| T |
31439361 |
gaaccttgagcaacaagtaacaacatcacaagatg |
31439327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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