View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13942_low_13 (Length: 309)

Name: NF13942_low_13
Description: NF13942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13942_low_13
NF13942_low_13
[»] chr4 (7 HSPs)
chr4 (204-302)||(31502962-31503060)
chr4 (205-302)||(31477821-31477917)
chr4 (208-302)||(31497767-31497861)
chr4 (18-65)||(31503190-31503237)
chr4 (85-121)||(31503138-31503174)
chr4 (206-245)||(31018931-31018970)
chr4 (206-242)||(31028809-31028845)
[»] chr6 (11 HSPs)
chr6 (203-295)||(33286676-33286768)
chr6 (215-302)||(33272938-33273025)
chr6 (204-302)||(9167906-9168004)
chr6 (213-295)||(31561663-31561745)
chr6 (215-301)||(33389215-33389301)
chr6 (203-302)||(33305620-33305719)
chr6 (203-302)||(33411086-33411185)
chr6 (215-302)||(33643452-33643539)
chr6 (258-295)||(33401803-33401840)
chr6 (211-295)||(33263791-33263875)
chr6 (213-295)||(33058707-33058789)
[»] scaffold0428 (1 HSPs)
scaffold0428 (258-302)||(7949-7993)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 204 - 302
Target Start/End: Complemental strand, 31503060 - 31502962
Alignment:
Q  204 taaacaactactttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaatattctt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31503060 taaacaactactttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaattttctt 31502962  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 302
Target Start/End: Complemental strand, 31477917 - 31477821
Alignment:
Q  205 aaacaactactttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaatattctt 302  Q
    |||||||||||| |||||||||||||||||||||| || ||||||| || | ||||| | ||| ||||| |||||| ||||||||||||||| |||||    
T  31477917 aaacaactactt-accattttctccaacatgacatcgttgacttgttttacgaaccatatcctcctccagtttctttgctctttgcttgaattttctt 31477821  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 302
Target Start/End: Complemental strand, 31497861 - 31497767
Alignment:
Q  208 caactactttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaatattctt 302  Q
    ||||||||||||||| ||||||||||| |||| || || ||||  ||  ||||||||||||||||||||||||  ||| |||||||||| |||||    
T  31497861 caactactttaccatattctccaacataacatcgtagaattgttctttcaaccacaacctgctccactttcttctctccttgcttgaattttctt 31497767  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 31503237 - 31503190
Alignment:
Q  18 tagacaagtgttcgactatcataaccttcttttcaccatctttattga 65  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  31503237 tagacaagtgttcgactatcataaccttcttttcatcatctttgttga 31503190  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 31503174 - 31503138
Alignment:
Q  85 aaagtatggcttcgacacgcctttcctaaagcattgc 121  Q
    |||||||||||||||||||||||||||||||||||||    
T  31503174 aaagtatggcttcgacacgcctttcctaaagcattgc 31503138  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 31018931 - 31018970
Alignment:
Q  206 aacaactactttaccattttctccaacatgacattgtcga 245  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  31018931 aacaactactttaccatattctccaacattacattgtcga 31018970  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 31028809 - 31028845
Alignment:
Q  206 aacaactactttaccattttctccaacatgacattgt 242  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  31028809 aacaactactttaccatattctccaacattacattgt 31028845  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 295
Target Start/End: Original strand, 33286676 - 33286768
Alignment:
Q  203 ctaaacaactactttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaa 295  Q
    ||||||||| |||||||||| ||||||||||| ||||||| || ||||  |    |||||||||||||||| |||||||||||||||||||||    
T  33286676 ctaaacaacaactttaccatattctccaacataacattgtagagttgttctgtggaccacaacctgctccattttcttggctctttgcttgaa 33286768  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 302
Target Start/End: Original strand, 33272938 - 33273025
Alignment:
Q  215 tttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaatattctt 302  Q
    |||||||||||||||| | | ||||||| || |||| ||||  |||||| |||||||||||||||| ||||||||||||||| |||||    
T  33272938 tttaccattttctccatcgtaacattgttgagttgtttttcggaccacaccctgctccactttcttcgctctttgcttgaattttctt 33273025  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 302
Target Start/End: Original strand, 9167906 - 9168004
Alignment:
Q  204 taaacaactactttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaatattctt 302  Q
    |||||||||||||||||||  |||||| |   ||||||| || |||| |||   |||||||||||||||| |||||| ||||||||||||||| |||||    
T  9167906 taaacaactactttaccatactctccatcgcaacattgtagagttgttttttggaccacaacctgctccattttctttgctctttgcttgaattttctt 9168004  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 31561745 - 31561663
Alignment:
Q  213 actttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaa 295  Q
    |||||||||||||||||| ||| ||||||| || ||||   |   ||||||||||||||||||||||| ||||||||||||||    
T  31561745 actttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttctttgctctttgcttgaa 31561663  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 33389215 - 33389301
Alignment:
Q  215 tttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaatattct 301  Q
    |||||||||||||||| | | ||||||| || |||| |||   |||||| |||||||||||||||| ||||||||||||||| ||||    
T  33389215 tttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttct 33389301  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 302
Target Start/End: Original strand, 33305620 - 33305719
Alignment:
Q  203 ctaaacaactactttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaatattctt 302  Q
    |||||||  ||||||||||| ||||||| ||| ||||||| || |||  |||   |||| | |||||||||||||||| ||||||||||||||| |||||    
T  33305620 ctaaacagttactttaccatattctccaccataacattgtagagttgctttttggaccagaccctgctccactttctttgctctttgcttgaattttctt 33305719  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 302
Target Start/End: Original strand, 33411086 - 33411185
Alignment:
Q  203 ctaaacaactactttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaatattctt 302  Q
    |||||||  ||||||||||| ||||||| ||| || |||| || |||| |||   |||| | |||||||||||||||| ||||||||||||||| |||||    
T  33411086 ctaaacagttactttaccatattctccatcataacgttgtagagttgttttttggaccagatcctgctccactttctttgctctttgcttgaattttctt 33411185  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 302
Target Start/End: Complemental strand, 33643539 - 33643452
Alignment:
Q  215 tttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaatattctt 302  Q
    |||||||| ||||||| ||  ||||||| || |||| |||   |||||| |||||||||||||||| ||||||||||||||| |||||    
T  33643539 tttaccatattctccatcacaacattgtagatttgttttttggaccacagcctgctccactttctttgctctttgcttgaattttctt 33643452  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 33401803 - 33401840
Alignment:
Q  258 accacaacctgctccactttcttggctctttgcttgaa 295  Q
    |||||||||||||||| |||||||||||||||||||||    
T  33401803 accacaacctgctccattttcttggctctttgcttgaa 33401840  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 295
Target Start/End: Original strand, 33263791 - 33263875
Alignment:
Q  211 ctactttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaa 295  Q
    |||||||||||| ||||||| | | ||||||| || |||| || |  |||||||||| ||||| |||||||||||||||| ||||    
T  33263791 ctactttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcatgaa 33263875  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 33058707 - 33058789
Alignment:
Q  213 actttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaa 295  Q
    |||||||||| ||||||||||| |||| || || ||||  |    |||||||||||||||| |||||||| ||||||||||||    
T  33058707 actttaccatattctccaacataacatcgtagagttgttctgtggaccacaacctgctccattttcttggttctttgcttgaa 33058789  T

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Target: scaffold0428 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 7949 - 7993
Alignment:
Q  258 accacaacctgctccactttcttggctctttgcttgaatattctt 302  Q
    |||||| |||||||||||||||| ||||||||||||||| |||||    
T  7949 accacatcctgctccactttctttgctctttgcttgaattttctt 7993  T

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