View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13942_low_14 (Length: 296)

Name: NF13942_low_14
Description: NF13942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13942_low_14
NF13942_low_14
[»] chr2 (4 HSPs)
chr2 (20-284)||(32785773-32786037)
chr2 (19-103)||(1037664-1037748)
chr2 (205-233)||(32786060-32786088)
chr2 (40-128)||(45245106-45245194)
[»] chr8 (7 HSPs)
chr8 (20-132)||(18315274-18315386)
chr8 (21-126)||(27922500-27922605)
chr8 (20-103)||(17636402-17636485)
chr8 (46-132)||(32151287-32151373)
chr8 (46-103)||(17628041-17628098)
chr8 (40-133)||(34936184-34936277)
chr8 (23-103)||(21235573-21235653)
[»] chr4 (22 HSPs)
chr4 (20-103)||(1519143-1519226)
chr4 (18-133)||(8184029-8184144)
chr4 (23-131)||(553466-553574)
chr4 (23-103)||(1548428-1548508)
chr4 (20-94)||(8187092-8187166)
chr4 (36-103)||(659726-659791)
chr4 (20-132)||(1524487-1524599)
chr4 (20-103)||(532204-532287)
chr4 (44-89)||(12116600-12116645)
chr4 (20-89)||(12121458-12121527)
chr4 (38-130)||(558486-558578)
chr4 (20-128)||(1513408-1513516)
chr4 (21-93)||(1545798-1545870)
chr4 (21-89)||(7307889-7307957)
chr4 (19-103)||(55908728-55908812)
chr4 (37-128)||(1508021-1508112)
chr4 (20-103)||(55505109-55505192)
chr4 (39-133)||(570336-570430)
chr4 (20-70)||(1489362-1489412)
chr4 (20-70)||(1537768-1537818)
chr4 (23-133)||(1552771-1552881)
chr4 (20-89)||(1600448-1600517)
[»] chr5 (5 HSPs)
chr5 (36-103)||(41901552-41901619)
chr5 (21-126)||(32267467-32267572)
chr5 (21-103)||(41889556-41889638)
chr5 (36-103)||(37937902-37937969)
chr5 (36-103)||(38267573-38267640)
[»] chr3 (7 HSPs)
chr3 (20-133)||(51113782-51113895)
chr3 (20-123)||(51120894-51120997)
chr3 (38-103)||(27005791-27005856)
chr3 (39-103)||(33093947-33094011)
chr3 (38-104)||(37580839-37580905)
chr3 (38-103)||(36811046-36811111)
chr3 (38-103)||(37587573-37587638)
[»] chr6 (8 HSPs)
chr6 (20-100)||(6432179-6432259)
chr6 (36-89)||(28935078-28935131)
chr6 (20-103)||(6410021-6410104)
chr6 (46-103)||(6394879-6394936)
chr6 (36-128)||(6402850-6402942)
chr6 (23-103)||(12102281-12102361)
chr6 (46-103)||(6585264-6585321)
chr6 (43-103)||(7994206-7994266)
[»] chr1 (4 HSPs)
chr1 (36-103)||(19468516-19468583)
chr1 (21-103)||(52082596-52082678)
chr1 (37-104)||(9586653-9586720)
chr1 (37-103)||(9581084-9581152)
[»] scaffold0295 (1 HSPs)
scaffold0295 (19-101)||(624-706)
[»] chr7 (1 HSPs)
chr7 (25-103)||(18724358-18724440)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 32785773 - 32786037
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggct 119  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785773 gaatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggct 32785872  T
Q  120 tttgaaactgttacaaggcatgttaactagcattcccaaaacaagggttgacacggatgtcgtatggactgtcaattgctgatctaaatataccatatac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785873 tttgaaactgttacaaggcatgttaactagcattcccaaaacaagggttgacacggatgtcgtatggactgtcaattgctgatctaaatataccatatac 32785972  T
Q  220 aaatatacaatactagggttcccaaaacaatgatgaaactgttacagtttagtgcatattcttcg 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  32785973 aaatatacaatactagggttcccaaaacaatgatgaaactgttacactttagtgcatattgttcg 32786037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 1037664 - 1037748
Alignment:
Q  19 agaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    ||||| |||||||||  |||  || |||||||||| ||||||||||||||| |  ||||||||||| |||| ||| |||||||||    
T  1037664 agaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaa 1037748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 32786060 - 32786088
Alignment:
Q  205 aaatataccatatacaaatatacaatact 233  Q
    |||||||||||||||||||||||||||||    
T  32786060 aaatataccatatacaaatatacaatact 32786088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 45245106 - 45245194
Alignment:
Q  40 aaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggcttttgaaact 128  Q
    ||||| ||||||||||| |||||| | ||||   ||||||||||| ||||  ||||||||||||  |||| || |||||||||| ||||    
T  45245106 aaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgcaact 45245194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 18315274 - 18315386
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggct 119  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||  |||| || | ||||    
T  18315274 gaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtaggct 18315373  T
Q  120 tttgaaactgtta 132  Q
    |||| ||||||||    
T  18315374 tttgcaactgtta 18315386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 27922605 - 27922500
Alignment:
Q  21 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggctt 120  Q
    |||||||||| ||  ||||||| | |||||||||||||||||| ||||||   |||||||||||||||||||| |||||||||  |||| |  |||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggctt 27922506  T
Q  121 ttgaaa 126  Q
    ||||||    
T  27922505 ttgaaa 27922500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 17636402 - 17636485
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    ||||||||||| ||  ||||||| | |||||||||||||||||||| ||| || |||| ||||||||| | |||||||||||||    
T  17636402 gaatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaa 17636485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 32151373 - 32151287
Alignment:
Q  46 gaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggcttttgaaactgtta 132  Q
    |||||||| |||||||||  ||||||  ||||||||||| |||| |||||||||||||  |||| |  |||||||||| ||||||||    
T  32151373 gaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtgggcttttgcaactgtta 32151287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 17628041 - 17628098
Alignment:
Q  46 gaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||   |||||||||||    
T  17628041 gaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaa 17628098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 34936184 - 34936277
Alignment:
Q  40 aaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggcttttgaaactgttac 133  Q
    ||||||||||||||| |||||||| |||||||| |||||||| || |||| ||||  ||| |||  |||| || |||||||||| |||| ||||    
T  34936184 aaactagaggtgttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggcttttgcaactattac 34936277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 21235653 - 21235573
Alignment:
Q  23 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    |||||||| ||  ||||||||| |||||||||||||||||| ||||| || ||||| | |||| ||| ||| |||| ||||    
T  21235653 tgaactttgaagttcccaaactggaggtgttgaacttgtcatatacaggagttgataacgaagaactctatttgatttcaa 21235573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 1519143 - 1519226
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||||  |||||||  ||||||| |||||||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaa 1519226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 8184029 - 8184144
Alignment:
Q  18 cagaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatggg 117  Q
    ||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||| ||||||||  |||||| ||||  |||||||  |||| |  ||||    
T  8184029 cagaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtggg 8184128  T
Q  118 cttttgaaactgttac 133  Q
    |||||| |||||||||    
T  8184129 cttttggaactgttac 8184144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 553574 - 553466
Alignment:
Q  23 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggctttt 122  Q
    |||||||||||  || |||||| ||||||||||||||||||  ||||||| ||||||||||||||||| ||||||| ||||  |||| |  |||||||||    
T  553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggctttt 553475  T
Q  123 gaaactgtt 131  Q
    | |||||||    
T  553474 gcaactgtt 553466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 1548428 - 1548508
Alignment:
Q  23 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    |||||||| ||  ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||  ||||||||||||    
T  1548428 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaa 1548508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 8187092 - 8187166
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatg 94  Q
    ||||||||||| ||  | ||||||| ||||||||||||||||||||||||||| |||||||| || |||||||||    
T  8187092 gaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatg 8187166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 659791 - 659726
Alignment:
Q  36 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    ||||||||||||||||||||||||||||||||||||  || || ||||| |||  |||||||||||||    
T  659791 tcccaaactagaggtgttgaacttgtcacatacaagtgttaataatgaaacac--tatgtgatctcaa 659726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 1524487 - 1524599
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggct 119  Q
    ||||||||||| ||  ||||||  | ||||||||||| ||||||| ||||||  ||||||||||| |||| ||| ||||||||   |||| || ||||||    
T  1524487 gaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggct 1524586  T
Q  120 tttgaaactgtta 132  Q
    |||| ||||||||    
T  1524587 tttgcaactgtta 1524599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 532287 - 532204
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    ||||||||||| ||   ||||| ||||||||||||||||||||| ||||||  ||||||||||||   |||||||||| |||||    
T  532287 gaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaaagctttatgtgacctcaa 532204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 12116600 - 12116645
Alignment:
Q  44 tagaggtgttgaacttgtcacatacaagaattgatgatgaagcact 89  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||    
T  12116600 tagaggtgttgaacttgtcacatacaagtgttgatgatgaatcact 12116645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 12121458 - 12121527
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcact 89  Q
    ||||||||||| ||  |||||||||||| ||||||||||||||| ||||||   ||||||||||| ||||    
T  12121458 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacact 12121527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 558578 - 558486
Alignment:
Q  38 ccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggcttttgaaactgt 130  Q
    |||| |||| ||||||||||||||||   |||   |||||||||||||||||  ||||||||||||  |||| || |||||||||| ||||||    
T  558578 ccaacctaggggtgttgaacttgtcattaacatatattgatgatgaagcactccatgtgatctcaaagagttgtcgtgggcttttggaactgt 558486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 1513408 - 1513516
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggct 119  Q
    ||||||||||| ||  |||||||||||| |||||||||||||||  |||||   ||||||||||| |||| || || |||||||   ||| || ||||||    
T  1513408 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggct 1513507  T
Q  120 tttgaaact 128  Q
    |||| ||||    
T  1513508 tttgcaact 1513516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 1545870 - 1545798
Alignment:
Q  21 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttat 93  Q
    |||||||||||||  ||| ||||| ||||||||||||||||    ||||||| ||||||||||| ||||||||    
T  1545870 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttat 1545798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 7307957 - 7307889
Alignment:
Q  21 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcact 89  Q
    |||||||||||||  ||||||| | ||||| |||||||||||| |||||  | ||||||||||||||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcact 7307889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 55908728 - 55908812
Alignment:
Q  19 agaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    ||||| |||||||||  |||  || |||||||||| ||||||||||||||| |  ||||||||||| |||| ||| |||||||||    
T  55908728 agaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaa 55908812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 1508021 - 1508112
Alignment:
Q  37 cccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggcttttgaaact 128  Q
    ||||||||||| |||||||||||||||||||| |   ||||||||||| |||| | ||| |||||||   ||| || |||||||||| ||||    
T  1508021 cccaaactagaagtgttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgcaact 1508112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 55505109 - 55505192
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    |||||||||||| |   ||| ||||||||||||||||||||||| ||||||   |||| |||| | |||||||||||| |||||    
T  55505109 gaatgaactttagagtcccccaactagaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaa 55505192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 570430 - 570336
Alignment:
Q  39 caaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggcttttgaaactgttac 133  Q
    |||||| |||||||||||||||||| ||||| || ||||| | |||| ||| ||| |||| ||||  |||| ||  ||||||||| |||||||||    
T  570430 caaactcgaggtgttgaacttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtcgcgggcttttgcaactgttac 570336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 1489362 - 1489412
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaa 70  Q
    ||||||||||| ||  |||||||||||| ||||||||||||||| ||||||    
T  1489362 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 1489412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 1537768 - 1537818
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaa 70  Q
    ||||||||||| ||  |||||||||||| ||||||||||||||| ||||||    
T  1537768 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 1537818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 1552771 - 1552881
Alignment:
Q  23 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggctttt 122  Q
    |||||||| ||  ||||||||| || |||||||| |||||||||||||  ||| |||||||| ||||  ||||||| ||||  | || || |||||||||    
T  1552771 tgaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtgggctttt 1552870  T
Q  123 gaaactgttac 133  Q
    | | |||||||    
T  1552871 gcagctgttac 1552881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 1600517 - 1600448
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcact 89  Q
    ||||||||||| ||  ||  ||||| |||||||||||||||||| |||||||  |||| |||||||||||    
T  1600517 gaatgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaagggttgacgatgaagcact 1600448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 41901552 - 41901619
Alignment:
Q  36 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    ||||||||| |||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||    
T  41901552 tcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaa 41901619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 32267572 - 32267467
Alignment:
Q  21 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggctt 120  Q
    |||||||||| ||  ||||||| | ||||| |||||||||||||| |||| | |||||||||||||||||||| |||||||||  |||| |  |||||||    
T  32267572 aatgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgggctt 32267473  T
Q  121 ttgaaa 126  Q
    ||||||    
T  32267472 ttgaaa 32267467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 41889556 - 41889638
Alignment:
Q  21 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    |||||||||||||  ||||||| | |||||||||||||| ||| |||||| | ||||||||||| ||||||||  ||||||||    
T  41889556 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaa 41889638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 37937969 - 37937902
Alignment:
Q  36 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    |||||| || ||||||||| ||||| |||||||||||||||||||| || |||| ||||| |||||||    
T  37937969 tcccaaccttgaggtgttggacttgacacatacaagaattgatgatcaaacactctatgtaatctcaa 37937902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 38267573 - 38267640
Alignment:
Q  36 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    |||||| || ||||||||| ||||| ||||||||||| ||||||||||  |||| ||||| |||||||    
T  38267573 tcccaaccttgaggtgttggacttgacacatacaagagttgatgatgacacactctatgtaatctcaa 38267640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 51113782 - 51113895
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggct 119  Q
    ||||||||||| || |||||||||| ||||||||  |||||||| ||||||   ||||||||||| |||| ||||||||||| |  |||| |  ||||||    
T  51113782 gaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtgggct 51113881  T
Q  120 tttgaaactgttac 133  Q
    |||| |||||||||    
T  51113882 tttgcaactgttac 51113895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 51120894 - 51120997
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggct 119  Q
    ||||||||||| ||  || |||| | ||||||||||||||||| ||||||||| |||||||||||  ||| ||||| |||||||  |||| || ||||||    
T  51120894 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggct 51120993  T
Q  120 tttg 123  Q
    ||||    
T  51120994 tttg 51120997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 27005791 - 27005856
Alignment:
Q  38 ccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    ||||||| ||||| ||||||||||||||||||||||||||| ||  | |||||||||| |||||||    
T  27005791 ccaaactggaggtcttgaacttgtcacatacaagaattgataatacaacactttatgtaatctcaa 27005856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 33093947 - 33094011
Alignment:
Q  39 caaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    |||||||||||| |||||||||||| |  || || |||||||||||| |||||||| ||||||||    
T  33093947 caaactagaggttttgaacttgtcaaagtcatgagttgatgatgaagtactttatgcgatctcaa 33094011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 37580839 - 37580905
Alignment:
Q  38 ccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaat 104  Q
    ||||||| ||||| |||||||||||| |  |||||||||||||| ||| | | ||||||||||||||    
T  37580839 ccaaactcgaggtattgaacttgtcaaactcaagaattgatgataaagtattgtatgtgatctcaat 37580905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 36811046 - 36811111
Alignment:
Q  38 ccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    ||||||| ||||||||||||||||| ||| ||||||||||| ||  |||||| ||||  |||||||    
T  36811046 ccaaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgcaatctcaa 36811111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 37587573 - 37587638
Alignment:
Q  38 ccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    ||||||| ||||| ||||||||||||||  |||||||||||||| ||| | | |||| ||||||||    
T  37587573 ccaaactggaggtattgaacttgtcacactcaagaattgatgataaagtattgtatgcgatctcaa 37587638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 6432259 - 6432179
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatct 100  Q
    ||||||||||| ||  |||||| ||  ||||||||||||||||| |||||||  ||||||||||| |||||||||||||||    
T  6432259 gaatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatct 6432179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 28935131 - 28935078
Alignment:
Q  36 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcact 89  Q
    |||| |||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  28935131 tccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcact 28935078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 6410104 - 6410021
Alignment:
Q  20 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    ||||||||||| ||  |||||| ||  |||||||||||| |||| |||||||  ||||||||||| | ||||||||||||||||    
T  6410104 gaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaa 6410021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 6394936 - 6394879
Alignment:
Q  46 gaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    |||||||||||||||||| |||||||  ||||||||||| | |||| |||||||||||    
T  6394936 gaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaa 6394879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 6402942 - 6402850
Alignment:
Q  36 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggcttttgaaact 128  Q
    |||| ||||||| ||||||||||||||| |||| |   ||||||||||| |||| |||||||||||||  | || |  |||||||||||||||    
T  6402942 tccccaactagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaact 6402850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 12102361 - 12102281
Alignment:
Q  23 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    |||||||| ||  ||||||||| |||||||||||||||||||||||| || ||||| | |||| ||| ||| |||| ||||    
T  12102361 tgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttcaa 12102281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 6585264 - 6585321
Alignment:
Q  46 gaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    ||||| |||||||||||| ||||||   ||||||||||| |||| |||||||||||||    
T  6585264 gaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaa 6585321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 7994206 - 7994266
Alignment:
Q  43 ctagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    ||||||||||||||| ||||| |||||||  || |||| ||| |||| |||||||||||||    
T  7994206 ctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaa 7994266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 19468516 - 19468583
Alignment:
Q  36 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    |||||| || ||||||||||| |||||| ||||||   ||||||||||| ||||||||||||||||||    
T  19468516 tcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaa 19468583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 52082678 - 52082596
Alignment:
Q  21 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    |||||||||| ||  | ||||| | |||||||||||||||||| | |||| ||||||||||||| || | |||||||||||||    
T  52082678 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaa 52082596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 9586720 - 9586653
Alignment:
Q  37 cccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaat 104  Q
    ||||| ||||||||||||||||||||| |||||    || |||||||| |||||||||||| ||||||    
T  9586720 cccaagctagaggtgttgaacttgtcatatacagatgttaatgatgaaacactttatgtgacctcaat 9586653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 9581152 - 9581084
Alignment:
Q  37 cccaaactagaggtgttgaacttgtcacatacaagaa--ttgatgatgaagcactttatgtgatctcaa 103  Q
    ||||| |||||||||||||||||||||  ||||| ||  || |||||||| | ||||||||||||||||    
T  9581152 cccaagctagaggtgttgaacttgtcatgtacaaaaaagttaatgatgaaacgctttatgtgatctcaa 9581084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 624 - 706
Alignment:
Q  19 agaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctc 101  Q
    ||||| |||||||||  |||  || |||||||||| |||||||||||||||||  | ||||||||| |||| ||| |||||||    
T  624 agaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatgatctc 706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 18724358 - 18724440
Alignment:
Q  25 aactttaaatctcccaaactagaggtgttg----aacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 103  Q
    |||||| || || |||||||||||||||||    |||||||||||  |||||||||||||| ||| ||| |||| ||||||||    
T  18724358 aactttgaagcttccaaactagaggtgttggttgaacttgtcacactcaagaattgatgataaagtactgtatgcgatctcaa 18724440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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